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Sodium in PDB, part 101 (files: 4001-4040), PDB 4gfi-4gwn

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 4001-4040 (PDB 4gfi-4gwn).
  1. 4gfi (Na: 4) - Crystal Structure of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens with Homology to Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu with Ordered Loop)
    Other atoms: Cl (5);
  2. 4gg1 (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403T
    Other atoms: Ca (2);
  3. 4gib (Na: 4) - 2.27 Angstrom Crystal Structure of Beta-Phosphoglucomutase (Pgmb) From Clostridium Difficile
  4. 4giq (Na: 1) - Crystal Structure of Mouse Rank Bound to Rankl
    Other atoms: Cl (2);
  5. 4gir (Na: 1) - Crystal Structure of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) with Homology to Mannonate Dehydratase, with Mg, Ethylene Glycol and Sulfate Bound (Ordered Loops, Space Group P41212)
    Other atoms: Mg (4); Cl (9);
  6. 4gk9 (Na: 1) - Crystal Structure of Burkholderia Oklahomensis Agglutinin (Boa) Bound to 3A,6A-Mannopentaose
  7. 4gkh (Na: 14) - Crystal Structure of the Aminoglycoside Phosphotransferase Aph(3')-Ia, with Substrate Kanamycin and Small Molecule Inhibitor 1-Na-PP1
    Other atoms: Cl (2);
  8. 4gki (Na: 14) - Crystal Structure of the Aminoglycoside Phosphotransferase Aph(3')-Ia, with Substrate Kanamycin and Small Molecule Inhibitor 1-Nm-PP1
    Other atoms: Cl (1);
  9. 4gly (Na: 2) - Human Urokinase-Type Plasminogen Activator Upa in Complex with the Two-Disulfide Bridge Peptide UK504
    Other atoms: Cl (3);
  10. 4gm0 (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403N
    Other atoms: Ca (2);
  11. 4gm1 (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403S
    Other atoms: Ca (2);
  12. 4gm4 (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403I
    Other atoms: Ca (2);
  13. 4gmm (Na: 1) - Structure of Rat Cytosolic Pepck LD_1G in Complex with Beta- Sulfopyruvate and Gtp
    Other atoms: Mn (2);
  14. 4gmu (Na: 1) - Structure of Rat Cytosolic Pepck LD_1G in Complex with Oxalate and Gtp
    Other atoms: Mn (3);
  15. 4gmw (Na: 1) - Structure of Rat Cytosolic Pepck LD_1G in Complex with Pep and Gdp
    Other atoms: Mn (4);
  16. 4gmz (Na: 1) - Structure of Rat Cytosolic Pepck LD_2G in Complex with Beta- Sulfopyruvate and Gtp
    Other atoms: Mn (3);
  17. 4gnj (Na: 1) - Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase
    Other atoms: As (2);
  18. 4gnl (Na: 1) - Structure of Rat Cytosolic Pepck LD_2G in Complex with Pep and Gdp
    Other atoms: Mn (2);
  19. 4gnm (Na: 2) - Structure of Rat Cytosolic Pepck LD_2G in Complex with Oxalate and Gtp
    Other atoms: Mn (2);
  20. 4gno (Na: 1) - Structure of Rat Cytosolic Pepck LD_3G in Complex with Beta- Sulfopyruvate and Gtp
    Other atoms: Mn (2);
  21. 4gnp (Na: 1) - Structure of Rat Cytosolic Pepck LD_3G in Complex with Pep and Gdp
    Other atoms: Mn (2);
  22. 4gnq (Na: 1) - Structure of Rat Cytosolic Pepck LD_3G in Complex with Oxalate and Gtp
    Other atoms: Mn (2);
  23. 4gog (Na: 2) - Crystal Structure of the Ges-1 Imipenem Acyl-Enzyme Complex
    Other atoms: I (19);
  24. 4goh (Na: 2) - Structure of the Substrate-Free Hmuo, Ho From Corynebacterium Diphtheriae
  25. 4gp7 (Na: 1) - Polynucleotide Kinase
    Other atoms: Mg (2);
  26. 4gp9 (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403F
    Other atoms: Ca (2);
  27. 4gpe (Na: 1) - Crystal Structure of Benzoylformate Decarboxylase Mutant L403M
    Other atoms: Ca (2);
  28. 4gpj (Na: 1) - Crystal Structure of the First Bromodomain of Human BRD4 in Complex with A Isoxazolylbenzimidazole Ligand
  29. 4gqd (Na: 3) - Dna Holliday Junction Stabilized By Chlorine Halogen Bond.
    Other atoms: Cl (2);
  30. 4grn (Na: 1) - Crystal Structure of Paam Mutant of Human Mif
    Other atoms: Cl (12);
  31. 4grx (Na: 4) - Structure of An Omega-Aminotransferase From Paracoccus Denitrificans
  32. 4gt6 (Na: 1) - Crystal Structure of A Leucine Rich Cell Surface Protein (FAEPRAA2165_01021) From Faecalibacterium Prausnitzii A2-165 at 1.80 A Resolution
  33. 4gu1 (Na: 2) - Crystal Structure of LSD2
    Other atoms: Zn (6); Cl (4);
  34. 4guk (Na: 4) - New Crystal Form Structure of Human NCS1
    Other atoms: Ca (12);
  35. 4gvc (Na: 1) - Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with Phosphorylated SYNDECAN1 Peptide
    Other atoms: Cl (2);
  36. 4gvd (Na: 2) - Crystal Structure of T-Cell Lymphoma Invasion and Metastasis-1 Pdz in Complex with SYNDECAN1 Peptide
    Other atoms: Cl (3);
  37. 4gvo (Na: 2) - Putative L-Cystine Abc Transporter From Listeria Monocytogenes
    Other atoms: Cl (2);
  38. 4gwe (Na: 2) - W116L-OYE1 Complexed with (R)-Carvone
    Other atoms: Mg (2); Cl (1);
  39. 4gwm (Na: 2) - Crystal Structure of Human Promeprin Beta
    Other atoms: Cl (5); Zn (2);
  40. 4gwn (Na: 1) - Crystal Structure of Human Mature Meprin Beta
    Other atoms: Cd (1);
Page generated: Sat Sep 25 14:45:14 2021

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