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Sodium in PDB 4grn: Crystal Structure of Paam Mutant of Human Mif

Enzymatic activity of Crystal Structure of Paam Mutant of Human Mif

All present enzymatic activity of Crystal Structure of Paam Mutant of Human Mif:
5.3.2.1; 5.3.3.12;

Protein crystallography data

The structure of Crystal Structure of Paam Mutant of Human Mif, PDB code: 4grn was solved by C.Fan, E.Lolis, D.Rajesekaran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.36 / 1.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.517, 95.517, 103.907, 90.00, 90.00, 120.00
R / Rfree (%) 12.8 / 14.1

Other elements in 4grn:

The structure of Crystal Structure of Paam Mutant of Human Mif also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Paam Mutant of Human Mif (pdb code 4grn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Paam Mutant of Human Mif, PDB code: 4grn:

Sodium binding site 1 out of 1 in 4grn

Go back to Sodium Binding Sites List in 4grn
Sodium binding site 1 out of 1 in the Crystal Structure of Paam Mutant of Human Mif


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Paam Mutant of Human Mif within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na203

b:17.6
occ:1.00
OG1 A:THR25 2.8 10.6 1.0
O A:ILE39 2.8 10.2 1.0
N C:GLY53 2.8 14.0 1.0
N C:GLY52 3.3 11.3 1.0
C C:ALA50 3.3 9.8 1.0
O C:ALA50 3.3 10.0 1.0
CB C:ALA50 3.4 12.9 1.0
N C:PHE51 3.5 10.2 1.0
CA C:GLY53 3.5 16.2 1.0
CG2 A:THR25 3.6 11.4 1.0
C C:PHE51 3.6 10.5 1.0
CA C:PHE51 3.7 10.3 1.0
C A:ILE39 3.8 9.1 1.0
CB A:THR25 3.8 10.3 1.0
C C:GLY52 3.8 15.1 1.0
CG2 A:VAL41 3.9 16.4 1.0
CA C:GLY52 3.9 13.6 1.0
CA A:ALA40 4.0 9.0 1.0
CA C:ALA50 4.0 10.5 1.0
N A:VAL41 4.0 8.7 1.0
C A:ALA40 4.3 8.7 1.0
N A:ALA40 4.3 9.0 1.0
CG1 A:VAL41 4.3 12.3 1.0
C C:GLY53 4.5 15.4 1.0
O C:PHE51 4.5 11.3 1.0
CB A:VAL41 4.5 10.4 1.0
CG2 A:ILE39 4.7 11.7 1.0
CA A:THR25 4.7 9.9 1.0
N C:SER54 4.7 12.6 1.0
CB A:ILE39 4.8 10.3 1.0
N C:ALA50 4.9 10.1 1.0
CA A:VAL41 4.9 9.0 1.0
CA A:ILE39 4.9 9.7 1.0
O C:GLY52 4.9 19.0 1.0

Reference:

C.Fan, E.Lolis, D.Rajesekaran. Crystallographic and Biological Chacerterization of N- and C-Terminus of Mif To Be Published.
Page generated: Tue Dec 15 06:42:05 2020

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