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Sodium in PDB 4gnj: Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase

Enzymatic activity of Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase

All present enzymatic activity of Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase, PDB code: 4gnj was solved by B.Kuaprasert, P.Riangrungroj, W.Pornthanakasem, W.Suginta, M.Mungthin, S.Leelayoova, U.Leartsakulpanich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.61 / 1.93
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 39.580, 78.790, 83.160, 90.00, 101.15, 90.00
R / Rfree (%) 15.1 / 19.9

Other elements in 4gnj:

The structure of Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase (pdb code 4gnj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase, PDB code: 4gnj:

Sodium binding site 1 out of 1 in 4gnj

Go back to Sodium Binding Sites List in 4gnj
Sodium binding site 1 out of 1 in the Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na302

b:6.9
occ:1.00
 O A:HOH580 2.2 26.6 1.0
O A:HOH581 2.3 21.3 1.0
OE2 A:GLU31 2.3 19.3 1.0
OE2 B:GLU197 2.3 23.4 1.0
O B:HOH461 2.3 24.1 1.0
O B:GLU197 2.5 18.7 1.0
CD A:GLU31 3.4 16.5 1.0
CD B:GLU197 3.5 23.9 1.0
C B:GLU197 3.5 17.6 1.0
CA B:GLU197 3.9 17.9 1.0
CG A:GLU31 3.9 14.1 1.0
NE2 A:GLN27 4.0 26.6 1.0
CG B:GLU197 4.1 21.2 1.0
O B:SER196 4.4 17.7 1.0
OE1 A:GLU31 4.5 17.8 1.0
OE1 B:GLU197 4.5 25.6 1.0
CB B:GLU197 4.6 18.6 1.0
N B:LYS198 4.7 16.9 1.0
O B:HOH478 4.9 28.7 1.0

Reference:

B.Kuaprasert, P.Riangrungroj, W.Pornthanakasem, W.Suginta, M.Mungthin, S.Leelayoova, U.Leartsakulpanich. Crystal Structure Analysis of Leishmania Siamensis Triosephosphate Isomerase To Be Published.
Page generated: Tue Dec 15 06:41:54 2020

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