Sodium in PDB 4giq: Crystal Structure of Mouse Rank Bound to Rankl

The structure of Crystal Structure of Mouse Rank Bound to Rankl, PDB code: 4giq was solved by C.A.Nelson, M.W.-H.Wang, D.H.Fremont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.74 / 2.70
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	120.636, 120.636, 94.297, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 21.6

The structure of Crystal Structure of Mouse Rank Bound to Rankl also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Mouse Rank Bound to Rankl (pdb code 4giq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mouse Rank Bound to Rankl, PDB code: 4giq:

Sodium binding site 1 out of 1 in the Crystal Structure of Mouse Rank Bound to Rankl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Rank Bound to Rankl within 5.0Å range: probe atom residue distance (Å) B Occ R:Na201 b:37.4 occ:1.00 O R:PHE108 2.4 28.1 1.0 OG R:SER131 2.4 29.1 1.0 O R:HOH336 2.5 41.0 1.0 O R:VAL133 2.6 35.1 1.0 O R:CYS104 2.6 36.3 1.0 O R:ALA105 2.7 36.3 1.0 C R:ALA105 3.2 46.7 1.0 C R:CYS104 3.4 30.5 1.0 CB R:SER131 3.4 31.5 1.0 C R:PHE108 3.6 29.1 1.0 N R:PRO106 3.7 36.0 1.0 C R:VAL133 3.7 38.7 1.0 CA R:PRO106 3.9 38.3 1.0 N R:ALA105 4.0 33.9 1.0 CB R:CYS104 4.0 35.5 1.0 CA R:ALA105 4.1 46.3 1.0 N R:PHE108 4.2 36.5 1.0 CA R:CYS104 4.3 30.1 1.0 N R:SER135 4.4 38.0 1.0 CA R:PHE108 4.5 30.8 1.0 N R:VAL133 4.5 33.7 1.0 N R:GLY109 4.6 29.4 1.0 C R:PRO106 4.6 35.7 1.0 O R:HOH307 4.6 26.8 1.0 CA R:PHE134 4.6 33.2 1.0 N R:GLY107 4.6 32.0 1.0 CD R:PRO106 4.6 42.6 1.0 N R:PHE134 4.6 44.8 1.0 CA R:SER131 4.6 34.7 1.0 CA R:GLY109 4.7 30.7 1.0 CA R:VAL133 4.7 37.7 1.0 CG2 R:VAL133 4.7 33.9 1.0 C R:SER131 4.7 29.4 1.0 O R:SER135 4.8 37.2 1.0 CB R:PHE108 4.9 41.0 1.0 O R:SER131 4.9 32.1 1.0 C R:PHE134 5.0 33.0 1.0

C.A.Nelson, J.T.Warren, M.W.Wang, S.L.Teitelbaum, D.H.Fremont. Rankl Employs Distinct Binding Modes to Engage Rank and the Osteoprotegerin Decoy Receptor. Structure V. 20 1971 2012.
ISSN: ISSN 0969-2126
PubMed: 23039992
DOI: 10.1016/J.STR.2012.08.030