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Sodium in PDB 4gvo: Putative L-Cystine Abc Transporter From Listeria Monocytogenes

Protein crystallography data

The structure of Putative L-Cystine Abc Transporter From Listeria Monocytogenes, PDB code: 4gvo was solved by J.Osipiuk, M.Makowska-Grzyska, K.Kwon, W.F.Anderson, A.Joachimiak, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.80 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 31.990, 170.628, 45.049, 90.00, 96.37, 90.00
R / Rfree (%) 10.6 / 15.4

Other elements in 4gvo:

The structure of Putative L-Cystine Abc Transporter From Listeria Monocytogenes also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes (pdb code 4gvo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes, PDB code: 4gvo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4gvo

Go back to Sodium Binding Sites List in 4gvo
Sodium binding site 1 out of 2 in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Putative L-Cystine Abc Transporter From Listeria Monocytogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na702

b:15.0
occ:1.00
O A:TYR75 2.2 19.0 1.0
OD1 A:ASP69 2.2 19.1 1.0
O A:HOH1144 2.3 21.6 1.0
O A:LEU72 2.3 13.4 1.0
O A:ASP69 2.3 11.8 1.0
C A:ASP69 3.2 11.6 1.0
C A:LEU72 3.3 12.8 1.0
C A:TYR75 3.3 17.2 1.0
CG A:ASP69 3.3 14.1 1.0
CA A:ASP69 3.7 10.9 1.0
O A:HOH1198 4.0 51.4 1.0
CB A:ASP69 4.1 11.6 1.0
N A:PRO73 4.1 17.1 1.0
CA A:PRO73 4.2 19.0 1.0
N A:TYR75 4.2 13.8 1.0
CA A:LEU72 4.2 11.4 1.0
N A:LYS76 4.2 13.5 1.0
CA A:TYR75 4.2 14.5 1.0
N A:LEU72 4.2 11.5 1.0
CB A:LEU72 4.3 12.5 1.0
O A:HOH1047 4.3 34.8 1.0
OD2 A:ASP69 4.3 20.8 1.0
CA A:LYS76 4.3 15.4 1.0
O A:HOH1149 4.4 32.4 1.0
N A:LYS70 4.4 11.7 1.0
C A:PRO73 4.5 15.7 1.0
CB A:TYR75 4.6 14.6 1.0
O A:PRO73 4.7 20.9 1.0
CD1 A:PHE77 4.8 15.2 1.0
CA A:LYS70 4.8 12.8 0.5
CA A:LYS70 4.8 13.1 0.5
C A:LYS70 4.9 12.0 1.0
CE1 A:PHE77 5.0 13.9 1.0

Sodium binding site 2 out of 2 in 4gvo

Go back to Sodium Binding Sites List in 4gvo
Sodium binding site 2 out of 2 in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Putative L-Cystine Abc Transporter From Listeria Monocytogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na504

b:15.1
occ:1.00
O B:TYR75 2.2 17.7 1.0
OD1 B:ASP69 2.3 18.4 1.0
O B:ASP69 2.3 12.5 1.0
O B:LEU72 2.3 14.3 1.0
O B:HOH924 2.3 23.8 1.0
C B:ASP69 3.2 12.4 1.0
C B:LEU72 3.3 13.1 1.0
C B:TYR75 3.4 16.4 1.0
CG B:ASP69 3.4 15.7 1.0
CA B:ASP69 3.7 11.3 1.0
O B:HOH925 4.0 39.0 1.0
CA B:PRO73 4.0 18.8 1.0
N B:PRO73 4.1 16.7 1.0
CA B:LEU72 4.1 11.9 1.0
CB B:ASP69 4.1 12.7 1.0
N B:TYR75 4.2 15.2 1.0
CA B:TYR75 4.2 15.2 1.0
N B:LEU72 4.2 11.8 1.0
N B:LYS76 4.3 15.5 1.0
CB B:LEU72 4.3 12.2 1.0
O B:HOH725 4.3 33.2 1.0
CA B:LYS76 4.3 16.5 0.6
N B:LYS70 4.3 13.1 1.0
CA B:LYS76 4.4 16.2 0.4
OD2 B:ASP69 4.4 20.8 1.0
C B:PRO73 4.4 18.7 1.0
O B:HOH937 4.5 30.7 1.0
CB B:TYR75 4.6 16.4 1.0
O B:PRO73 4.6 20.6 1.0
CD1 B:PHE77 4.8 16.3 1.0
CA B:LYS70 4.8 15.0 1.0
C B:LYS70 4.9 12.2 1.0
CE1 B:PHE77 5.0 16.6 1.0
N B:GLY74 5.0 16.2 1.0

Reference:

J.Osipiuk, M.Makowska-Grzyska, K.Kwon, W.F.Anderson, A.Joachimiak. Putative L-Cystine Abc Transporter From Listeria Monocytogenes To Be Published.
Page generated: Mon Oct 7 15:39:47 2024

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