Sodium in PDB 4gvo: Putative L-Cystine Abc Transporter From Listeria Monocytogenes

The structure of Putative L-Cystine Abc Transporter From Listeria Monocytogenes, PDB code: 4gvo was solved by J.Osipiuk, M.Makowska-Grzyska, K.Kwon, W.F.Anderson, A.Joachimiak, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.80 / 1.45
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	31.990, 170.628, 45.049, 90.00, 96.37, 90.00
R / Rfree (%)	10.6 / 15.4

The structure of Putative L-Cystine Abc Transporter From Listeria Monocytogenes also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes (pdb code 4gvo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes, PDB code: 4gvo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Putative L-Cystine Abc Transporter From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:15.0 occ:1.00 O A:TYR75 2.2 19.0 1.0 OD1 A:ASP69 2.2 19.1 1.0 O A:HOH1144 2.3 21.6 1.0 O A:LEU72 2.3 13.4 1.0 O A:ASP69 2.3 11.8 1.0 C A:ASP69 3.2 11.6 1.0 C A:LEU72 3.3 12.8 1.0 C A:TYR75 3.3 17.2 1.0 CG A:ASP69 3.3 14.1 1.0 CA A:ASP69 3.7 10.9 1.0 O A:HOH1198 4.0 51.4 1.0 CB A:ASP69 4.1 11.6 1.0 N A:PRO73 4.1 17.1 1.0 CA A:PRO73 4.2 19.0 1.0 N A:TYR75 4.2 13.8 1.0 CA A:LEU72 4.2 11.4 1.0 N A:LYS76 4.2 13.5 1.0 CA A:TYR75 4.2 14.5 1.0 N A:LEU72 4.2 11.5 1.0 CB A:LEU72 4.3 12.5 1.0 O A:HOH1047 4.3 34.8 1.0 OD2 A:ASP69 4.3 20.8 1.0 CA A:LYS76 4.3 15.4 1.0 O A:HOH1149 4.4 32.4 1.0 N A:LYS70 4.4 11.7 1.0 C A:PRO73 4.5 15.7 1.0 CB A:TYR75 4.6 14.6 1.0 O A:PRO73 4.7 20.9 1.0 CD1 A:PHE77 4.8 15.2 1.0 CA A:LYS70 4.8 12.8 0.5 CA A:LYS70 4.8 13.1 0.5 C A:LYS70 4.9 12.0 1.0 CE1 A:PHE77 5.0 13.9 1.0

Sodium binding site 2 out of 2 in the Putative L-Cystine Abc Transporter From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Putative L-Cystine Abc Transporter From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Na504 b:15.1 occ:1.00 O B:TYR75 2.2 17.7 1.0 OD1 B:ASP69 2.3 18.4 1.0 O B:ASP69 2.3 12.5 1.0 O B:LEU72 2.3 14.3 1.0 O B:HOH924 2.3 23.8 1.0 C B:ASP69 3.2 12.4 1.0 C B:LEU72 3.3 13.1 1.0 C B:TYR75 3.4 16.4 1.0 CG B:ASP69 3.4 15.7 1.0 CA B:ASP69 3.7 11.3 1.0 O B:HOH925 4.0 39.0 1.0 CA B:PRO73 4.0 18.8 1.0 N B:PRO73 4.1 16.7 1.0 CA B:LEU72 4.1 11.9 1.0 CB B:ASP69 4.1 12.7 1.0 N B:TYR75 4.2 15.2 1.0 CA B:TYR75 4.2 15.2 1.0 N B:LEU72 4.2 11.8 1.0 N B:LYS76 4.3 15.5 1.0 CB B:LEU72 4.3 12.2 1.0 O B:HOH725 4.3 33.2 1.0 CA B:LYS76 4.3 16.5 0.6 N B:LYS70 4.3 13.1 1.0 CA B:LYS76 4.4 16.2 0.4 OD2 B:ASP69 4.4 20.8 1.0 C B:PRO73 4.4 18.7 1.0 O B:HOH937 4.5 30.7 1.0 CB B:TYR75 4.6 16.4 1.0 O B:PRO73 4.6 20.6 1.0 CD1 B:PHE77 4.8 16.3 1.0 CA B:LYS70 4.8 15.0 1.0 C B:LYS70 4.9 12.2 1.0 CE1 B:PHE77 5.0 16.6 1.0 N B:GLY74 5.0 16.2 1.0

J.Osipiuk, M.Makowska-Grzyska, K.Kwon, W.F.Anderson, A.Joachimiak. Putative L-Cystine Abc Transporter From Listeria Monocytogenes To Be Published.