Sodium in PDB, part 232 (files: 9241-9280),
PDB 6yu3-6z81
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9241-9280 (PDB 6yu3-6z81).
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6yu3 (Na: 2) - Crystal Structure of Mhst in Complex with L-Phenylalanine
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6yu4 (Na: 2) - Crystal Structure of Mhst in Complex with L-4F-Phenylalanine
Other atoms:
F (1);
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6yu5 (Na: 4) - Crystal Structure of Mhst in Complex with L-Valine
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6yu6 (Na: 4) - Crystal Structure of Mhst in Complex with L-Leucine
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6yu7 (Na: 2) - Crystal Structure of Mhst in Complex with L-Tyrosine
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6yu8 (Na: 11) - Rna Methyltransferase of Sudan Ebola Virus
Other atoms:
Mg (2);
Cl (3);
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6yuu (Na: 1) - Crystal Structure of M. Tuberculosis Inha Inhibited By SKTS1
Other atoms:
Cl (5);
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6yux (Na: 2) - Crystal Structure of Malus Domestica Double Bond Reductase (Mddbr) Ternary Complex
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6yv5 (Na: 1) - Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus
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6yxc (Na: 1) - Structure of Chloroflexus Aggregans Flavin Based Fluorescent Protein (Cagfbfp) Q148R Variant
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6yxh (Na: 2) - Cryogenic Human Alkaline Ceramidase 3 (ACER3) at 2.6 A Resolution Determined By Serial Crystallography (Ssx) Using Crystaldirect
Other atoms:
Ca (1);
Mg (2);
Zn (1);
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6yyi (Na: 2) - Crystal Structure of Beta-D-Xylosidase From Dictyoglomus Thermophilum Bound to Beta-D-Xylopyranose
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6yz0 (Na: 3) - Full Length Open-Form Sodium Channel Navms F208L in Complex with Cannabidiol (Cbd)
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6yz2 (Na: 3) - Full Length Open-Form Sodium Channel Navms F208L
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6yzh (Na: 1) - Crystal Structure of P8C9 Bound to CK2ALPHA
Other atoms:
Mg (2);
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6yzs (Na: 1) - Carborane Closo-Pentyl-Sulfonamide in Complex with Ca II
Other atoms:
Zn (1);
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6z02 (Na: 1) - Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv in Surfo Crystallization
Other atoms:
Mg (4);
K (1);
Fe (1);
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6z0l (Na: 1) - Het-N2 - De Novo Designed Three-Helix Heterodimer with Cysteine at the N2 Position of the Alpha-Helix
Other atoms:
Cd (5);
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6z19 (Na: 1) - Crystal Structure of P8C9 Bound to CK2ALPHA
Other atoms:
Mg (2);
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6z1y (Na: 6) - Crystal Structure of Type-I Ribosome-Inactivating Protein Trichobakin (Tbk)
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6z31 (Na: 2) - Human Cation-Independent Mannose 6-Phosphate/ IGF2 Receptor Domain 8
Other atoms:
Cl (2);
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6z3x (Na: 1) - Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1
Other atoms:
As (6);
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6z48 (Na: 4) - Crystal Structure of Thrombin in Complex with Macrocycle X1VE
Other atoms:
Cl (4);
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6z50 (Na: 1) - Crystal Structure of CLK1 in Complex with Macrocycle ODS2003208
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6z55 (Na: 3) - Crystal Structure of CLK3 in Complex with Macrocycle ODS2004070
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6z57 (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004078
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6z58 (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2003791
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6z59 (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2003816
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6z5a (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941
Other atoms:
Zn (1);
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6z5c (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004070
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6z5d (Na: 1) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082
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6z5e (Na: 2) - Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004093
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6z5t (Na: 2) - Sars-Cov-2 Macrodomain in Complex with Adp-Ribose
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6z5x (Na: 1) - The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8
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6z6a (Na: 1) - KEAP1 Macrocycle Complex
Other atoms:
Cl (1);
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6z6i (Na: 9) - Sars-Cov-2 Macrodomain in Complex with Adp-Hpd
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6z6u (Na: 24) - 1.25 A Structure of Human Apoferritin Obtained From Titan Mono-Bcor Microscope
Other atoms:
Mg (2);
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6z72 (Na: 4) - Sars-Cov-2 Macrodomain in Complex with Adp-Hpm
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6z74 (Na: 2) - Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum
Other atoms:
Zn (4);
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6z81 (Na: 3) - Tsabd Bound to the Inhibitor
Other atoms:
Ni (4);
Zn (2);
Page generated: Mon Dec 15 11:16:00 2025
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