Sodium in PDB 6yv5: Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus

The structure of Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus, PDB code: 6yv5 was solved by M.R.Rangel Pereira, P.Brear, P.Knyphausen, L.Jermutus, F.Hollfelder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.16 / 1.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.92, 64.34, 73.15, 90, 90, 90
R / Rfree (%)	18.6 / 20

The binding sites of Sodium atom in the Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus (pdb code 6yv5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus, PDB code: 6yv5:

Sodium binding site 1 out of 1 in the Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:41.4 occ:1.00 O A:SER24 2.5 15.7 0.4 OG A:SER24 2.7 35.2 0.6 OH A:TYR45 3.0 20.3 1.0 C A:SER24 3.2 18.0 0.4 OD1 A:ASN44 3.3 28.3 1.0 CB A:SER24 3.3 17.8 0.4 CE2 A:TYR45 3.5 14.8 1.0 CZ A:TYR45 3.7 17.8 1.0 O A:SER24 3.7 22.0 0.6 C A:SER24 3.7 21.6 0.6 OG A:SER24 3.8 23.8 0.4 CA A:SER24 3.8 14.8 0.4 CB A:SER24 3.9 25.3 0.6 CG1 A:VAL41 4.0 13.1 1.0 CB A:ALA25 4.0 15.9 1.0 CA A:SER24 4.1 20.5 0.6 CG A:ASN44 4.2 30.8 1.0 N A:SER24 4.2 20.0 0.6 N A:SER24 4.2 16.1 0.4 N A:ALA25 4.2 16.1 1.0 O A:VAL41 4.3 14.0 1.0 CB A:ASN44 4.4 16.6 1.0 CA A:VAL41 4.5 11.9 1.0 CB A:VAL41 4.7 13.6 1.0 CA A:ALA25 4.7 13.2 1.0 CD2 A:TYR45 4.7 14.4 1.0 C A:VAL41 4.9 14.0 1.0 CG2 A:VAL41 4.9 14.1 1.0 CE1 A:TYR45 5.0 19.8 1.0 O A:HOH411 5.0 45.1 1.0 CB A:PHE22 5.0 14.0 1.0

P.Knyphausen, M.R.Rangel Pereira, P.Brear, L.Jermutus, F.Hollfelder. Crystal Structure of Serine Protease Splb N2K/N3Q/S154R From Staphylococcus Aureus To Be Published.