Sodium in PDB 6z5d: Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082

All present enzymatic activity of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082:
2.7.11.1;

The structure of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082, PDB code: 6z5d was solved by A.Chaikuad, P.Benderitter, J.Hoflack, A.Denis, S.Knapp, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.63 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	78.357, 78.839, 81.055, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 17.8

The binding sites of Sodium atom in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082 (pdb code 6z5d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082, PDB code: 6z5d:

Sodium binding site 1 out of 1 in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na806 b:27.1 occ:1.00 O A:HOH903 2.3 16.0 1.0 O A:HOH1246 2.4 23.2 1.0 O A:GLU554 2.7 11.9 1.0 OE1 A:GLU606 3.0 20.3 1.0 O A:PHE556 3.1 17.4 1.0 C A:GLU554 3.7 11.6 1.0 O A:HOH1107 3.7 34.0 1.0 C A:PHE556 3.8 12.2 1.0 N A:GLY558 3.8 10.6 1.0 CD A:GLU606 3.8 21.2 1.0 OE2 A:GLU606 3.9 22.8 1.0 CA A:ILE557 4.0 12.1 1.0 C A:ILE557 4.1 11.8 1.0 CA A:GLU554 4.1 11.2 1.0 CB A:GLU554 4.2 12.8 1.0 N A:ILE557 4.2 13.3 1.0 OG A:SER684 4.5 10.5 1.0 N A:PHE556 4.6 9.3 1.0 O A:HOH967 4.6 15.5 1.0 CA A:GLY558 4.6 10.2 1.0 O A:HOH1068 4.7 14.8 1.0 N A:GLY555 4.7 10.3 1.0 CA A:PHE556 4.8 9.6 1.0 O A:ILE557 5.0 12.8 1.0

A.Chaikuad, P.Benderitter, J.Hoflack, A.Denis, S.Knapp, Structural Genomics Consortium (Sgc). Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2004082 To Be Published.