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Sodium in PDB 6z3x: Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1

Protein crystallography data

The structure of Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1, PDB code: 6z3x was solved by E.Costanzi, P.Sormanni, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.34 / 1.74
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.718, 52.411, 99.176, 90, 90, 90
R / Rfree (%) 19.3 / 22

Other elements in 6z3x:

The structure of Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1 also contains other interesting chemical elements:

Arsenic (As) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1 (pdb code 6z3x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1, PDB code: 6z3x:

Sodium binding site 1 out of 1 in 6z3x

Go back to Sodium Binding Sites List in 6z3x
Sodium binding site 1 out of 1 in the Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na207

b:63.4
occ:1.00
O2 B:CAC203 2.6 80.9 1.0
O B:ALA73 3.2 27.6 1.0
AS B:CAC203 3.3 70.2 1.0
O1 B:CAC203 3.3 72.6 1.0
C1 B:CAC203 3.7 73.5 1.0
CA B:ASP74 3.7 22.9 1.0
CB B:ASP74 3.9 25.8 1.0
CG B:ASP74 4.0 33.7 1.0
OD1 B:ASP74 4.1 32.6 1.0
C B:ALA73 4.1 26.0 1.0
O1 B:CAC205 4.4 70.8 0.7
N B:ASP74 4.4 23.6 1.0
OD2 B:ASP74 4.5 32.8 1.0
C B:ASP74 4.9 27.1 1.0
N B:THR75 5.0 20.6 1.0

Reference:

E.Costanzi, P.Sormanni, S.Ricagno. Crystal Structure of the Designed Antibody Desab-Anti-Hsa-P1 To Be Published.
Page generated: Tue Oct 8 15:18:09 2024

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