Sodium in PDB 1vmf: Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution

The structure of Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution, PDB code: 1vmf was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.48 / 1.46
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.601, 58.951, 134.964, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 17.5

The binding sites of Sodium atom in the Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution (pdb code 1vmf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution, PDB code: 1vmf:

Sodium binding site 1 out of 1 in the Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Ybjq-Like Fold Protein of Unknown Function (BH3498) From Bacillus Halodurans at 1.46 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na134 b:13.7 occ:1.00 O B:HOH140 2.3 19.1 1.0 O B:THR90 2.3 18.3 1.0 O A:THR90 2.3 17.8 1.0 O C:THR90 2.3 19.2 1.0 O A:HOH137 2.4 17.7 1.0 O C:HOH138 2.4 17.1 1.0 C B:THR90 3.4 18.0 1.0 C A:THR90 3.4 17.1 1.0 C C:THR90 3.4 18.2 1.0 O B:SER89 4.1 20.3 1.0 CA C:THR90 4.1 17.5 1.0 CA B:THR90 4.1 17.6 1.0 O C:SER89 4.2 19.4 1.0 CA A:THR90 4.2 16.6 1.0 O A:SER89 4.2 18.4 1.0 N B:VAL91 4.4 15.3 1.0 N A:VAL91 4.4 16.3 1.0 C B:VAL91 4.4 16.6 1.0 N C:VAL91 4.4 16.8 1.0 C A:VAL91 4.4 16.4 1.0 C C:VAL91 4.4 17.4 1.0 CA B:VAL91 4.4 16.3 1.0 O A:HOH150 4.5 22.7 1.0 O C:HOH152 4.5 22.1 1.0 CA A:VAL91 4.5 17.2 1.0 O B:HOH146 4.5 21.1 1.0 CA C:VAL91 4.5 16.7 1.0 O B:VAL91 4.5 17.7 1.0 O A:VAL91 4.5 17.7 1.0 O C:VAL91 4.6 17.6 1.0 N B:GLY92 4.7 16.8 1.0 N A:GLY92 4.8 17.3 1.0 N C:GLY92 4.8 16.7 1.0 CG2 C:THR90 4.9 17.6 1.0 C B:SER89 4.9 19.2 1.0 CG2 A:THR90 5.0 18.7 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.