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Sodium in PDB, part 299 (files: 11921-11960), PDB 8vnr-8wch

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11921-11960 (PDB 8vnr-8wch).
  1. 8vnr (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 1 Mm MN2+ For 600S and Then 100 Mm Imidazole For 15 Hrs
    Other atoms: Zn (4);
  2. 8vns (Na: 2) - Homing Endonuclease I-Ppoi-Dna Complex:Reaction at PH6.0 (K+ Mes) with 200 Mm MN2+ For 600S
    Other atoms: Mn (2); Zn (4);
  3. 8vnu (Na: 2) - Homing Endonuclease H98A I-Ppoi-Dna Complex at PH6.0 (K+ Mes) with 70 Mm Tl+ For 1800S
    Other atoms: Zn (4); Tl (2);
  4. 8vr2 (Na: 1) - Crystal Structure of the PCRYO_0617 Oxidoreductase/Decarboxylase From Psychrobacter Cryohalolentis K5 in the Presence of Nad and Udp
  5. 8vtp (Na: 5) - Structure of FABS1CE-Epr-1, A High Affinity Antibody For the Erythropoeitin Receptor
    Other atoms: Cl (3);
  6. 8vu4 (Na: 14) - Structure of FABS1CE4-Epr-1, An Elbow-Locked High Affinity Antibody For the Erythropoeitin Receptor
    Other atoms: Cl (8);
  7. 8vui (Na: 4) - Structure of FABS1CE-Epr-1, An Elbow-Locked Fab, in Complex with the Erythropoeitin Receptor
    Other atoms: Cl (6);
  8. 8vvm (Na: 4) - Structure of FABS1CE1-EPR1-1 in Complex with the Erythropoietin Receptor
    Other atoms: Cl (7);
  9. 8vvn (Na: 2) - Cryo-Em Structure of A Type I Zorab Complex From Shewanella Sp. Strain Ana-3
  10. 8vvo (Na: 1) - Structure of FABS1CE2-EPR1-1 in Complex with the Erythropoietin Receptor
    Other atoms: Cl (1);
  11. 8vx3 (Na: 1) - Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus
    Other atoms: Cl (2);
  12. 8vyd (Na: 6) - A Novel Synthase Generates M4(2)C to Stabilize the Archaeal Ribosome
  13. 8w06 (Na: 1) - Crystal Structure of the Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood with Pgh
    Other atoms: Cl (1);
  14. 8w0b (Na: 2) - Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with A Cyclopropyl Amp Ester Inhibitor
  15. 8w0c (Na: 2) - Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with A Cyclopentyl Ester Amp Inhibitor
    Other atoms: Cl (1);
  16. 8w0d (Na: 2) - Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor
    Other atoms: Cl (5);
  17. 8w1w (Na: 4) - 2.03 Angstrom Resolution Crystal Structure of As-Isolated Katg From Mycobacterium Tuberculosis with An Myw-Ooh Cofactor
    Other atoms: Fe (4);
  18. 8w1x (Na: 1) - 2.35-Angstrom Resolution Intermediate Crystal Structure of Katg From Mycobacterium Tuberculosis with An Myw-Ooh Cofactor Soaked with Peroxide For 5 Minutes
    Other atoms: Fe (2);
  19. 8w1y (Na: 4) - 2.30 Angstrom Resolution Intermediate Crystal Structure of Katg From Mycobacterium Tuberculosis with An Myw-Ooh Cofactor Soaked with Peroxide For 1 Minute
    Other atoms: Fe (4);
  20. 8w2c (Na: 1) - Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm
  21. 8w3m (Na: 10) - Crystal Structure of Enterovirus 68 3C Protease with AG7404 at 1.97 Angstroms
  22. 8w42 (Na: 1) - X-Ray Crystal Structure of V30M-Ttr in Complex with Resveratrol
  23. 8w43 (Na: 1) - X-Ray Crystal Structure of V30M-Ttr in Complex with Piceatannol
  24. 8w44 (Na: 2) - X-Ray Crystal Structure of V30M-Ttr in Complex with Oxyresveratrol
  25. 8w45 (Na: 2) - X-Ray Crystal Structure of V30M-Ttr in Complex with Pinostilbene
  26. 8w46 (Na: 1) - X-Ray Crystal Structure of V30M-Ttr in Complex with Pterostilbene
  27. 8w47 (Na: 2) - X-Ray Crystal Structure of V30M-Ttr in Complex with Isorhapontigenin
  28. 8w4x (Na: 1) - Neutron Structure of Cellulase CEL6A From Phanerochaete Chrysosporium at Room Temperature, Enzyme-Product Complex
  29. 8w4z (Na: 1) - Neutron Structure of Cellulase CEL6A From Phanerochaete Chrysosporium at Room Temperature, Enzyme-Product Complex, H2O Solvent
  30. 8w6c (Na: 4) - Cryoem Structure of NADC1 with Citrate
  31. 8w6d (Na: 2) - Cryoem Structure of NADC1 in Apo State
  32. 8w6h (Na: 2) - NAS1 with Sulfate - in/in State
  33. 8w6n (Na: 1) - NAS1 with Sulfate in in/Out State
  34. 8w6o (Na: 4) - NAS1 in in/in State
  35. 8w7h (Na: 2) - Purine Nucleoside Phosphorylase in Complex with MMV000848
  36. 8w8v (Na: 1) - High-Resolution X-Ray Structure of Cellulase CEL6A From Phanerochaete Chrysosporium at Cryogenic Temperature, Enzyme-Product Complex
    Other atoms: Cl (1);
  37. 8w9n (Na: 2) - Structure of ATHKT1;1 in Nacl at 2.7 Angstroms Resolution
  38. 8w9t (Na: 2) - Structure of TAHKT2;1 in Nacl at 2.6 Angstroms Resolution
  39. 8wc0 (Na: 4) - Crystal Structure of Ecthsa
  40. 8wch (Na: 2) - Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate
Page generated: Sat Aug 23 06:32:44 2025

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