Sodium in PDB 8vx3: Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus

The structure of Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus, PDB code: 8vx3 was solved by S.Ahmad, K.K.Tsang, V.Schiefer, Y.Kim, J.C.Whitney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.57 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.939, 133.059, 68.05, 90, 89.77, 90
R / Rfree (%)	23.8 / 27.6

The structure of Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus (pdb code 8vx3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus, PDB code: 8vx3:

Sodium binding site 1 out of 1 in the Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na304 b:57.5 occ:1.00 O B:GLY138 2.3 57.7 1.0 OG1 B:THR137 2.4 58.8 1.0 OG B:SER119 2.5 67.5 1.0 O B:LYS121 2.9 60.7 1.0 N B:VAL120 3.1 65.4 1.0 CA B:SER119 3.2 55.1 1.0 C B:GLY138 3.2 61.2 1.0 CB B:SER119 3.2 56.1 1.0 N B:GLY138 3.4 62.7 1.0 C B:SER119 3.6 59.1 1.0 N B:LYS121 3.7 57.1 1.0 CB B:THR137 3.8 63.0 1.0 CA B:GLY138 3.8 54.7 1.0 C B:LYS121 4.0 57.0 1.0 CD2 B:TRP139 4.0 55.9 1.0 CE2 B:TRP139 4.1 56.3 1.0 N B:TRP139 4.1 54.1 1.0 C B:THR137 4.2 67.0 1.0 CG B:TRP139 4.2 54.2 1.0 CA B:VAL120 4.3 64.1 1.0 NE1 B:TRP139 4.3 55.6 1.0 C B:VAL120 4.4 57.8 1.0 CD1 B:TRP139 4.4 54.4 1.0 CA B:THR137 4.4 61.7 1.0 CA B:TRP139 4.4 60.4 1.0 CE3 B:TRP139 4.4 59.5 1.0 CE3 B:TRP122 4.4 68.2 1.0 CA B:LYS121 4.4 57.8 1.0 N B:SER119 4.5 65.7 1.0 CZ2 B:TRP139 4.5 57.8 1.0 O B:SER119 4.8 57.7 1.0 O B:ASP118 4.8 83.9 1.0 CG2 B:THR137 4.8 60.5 1.0 CZ3 B:TRP139 4.8 63.0 1.0 CH2 B:TRP139 4.9 58.4 1.0 CB B:TRP139 4.9 54.2 1.0 CZ3 B:TRP122 4.9 70.4 1.0 CB B:VAL120 5.0 60.1 1.0

S.Ahmad, K.K.Tsang, V.Schiefer, Y.Kim, J.C.Whitney. Crystal Structure of A (P)Ppapp Synthetase From Streptomyces Albidoflavus To Be Published.