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Sodium in PDB, part 248 (files: 9881-9920), PDB 7icq-7k15

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9881-9920 (PDB 7icq-7k15).
  1. 7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
    Other atoms: Zn (1);
  2. 7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
    Other atoms: Zn (2);
  3. 7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  4. 7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
    Other atoms: Zn (1);
  5. 7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
    Other atoms: Cd (1);
  6. 7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
  7. 7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
  8. 7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
  9. 7jgk (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K
    Other atoms: Ni (3);
  10. 7jgo (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K
    Other atoms: Ni (3);
  11. 7jgp (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate at 318K
    Other atoms: Ni (3);
  12. 7jgq (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K After One Heating/Cooling Cycle
    Other atoms: Ni (3);
  13. 7jhk (Na: 1) - Structure of Human Beta 1,3-N-Acetylglucosaminyltransferase 2 in Unliganded Form
    Other atoms: Cl (6);
  14. 7jhq (Na: 3) - Oxa-48 Bound By Compound 2.3
    Other atoms: Cl (2);
  15. 7jja (Na: 2) - Crystal Structure of the Zint-Like Domain of Streptococcus Pneumoniae Adca in the Apo Form
  16. 7jjb (Na: 6) - Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca
    Other atoms: Mg (1); Zn (2);
  17. 7jky (Na: 1) - Bromodomain-Containing Protein 4 (BRD4) Bromodomain 1 (BD1) Complexed with YF3-126
  18. 7jlk (Na: 17) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV1 Scfv
    Other atoms: Cl (14);
  19. 7jln (Na: 1) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV9 Fab
  20. 7jmq (Na: 1) - The External Aldimine Form of the Mutant Beta-S377A Salmonella Thypi Tryptophan Synthase in Open Conformation Showing Dual Side Chain Conformations For the Residue Beta-Q114, Sodium Ion at the Metal Coordination Site, and F9 Inhibitor at the Alpha-Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
    Other atoms: Cs (2); Cl (1); F (3);
  21. 7jr1 (Na: 4) - Crystal Structure of the R64F Mutant of Bauhinia Bauhinioides Kallikrein Inhibitor Complexed with Bovine Trypsin
  22. 7jr6 (Na: 2) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
    Other atoms: Mg (2); F (2);
  23. 7jr8 (Na: 3) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
    Other atoms: Mg (2); Cl (1);
  24. 7jsj (Na: 4) - Structure of the Nact-PF2 Complex
  25. 7jsk (Na: 4) - Structure of the Nact-Citrate Complex
  26. 7jtj (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase
  27. 7jto (Na: 1) - Crystal Structure of Protac MS33 in Complex with the Wd Repeat- Containing Protein 5 and Pvhl:Elonginc:Elonginb
    Other atoms: F (3);
  28. 7jua (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase at 2.35 A Resolution
  29. 7jw9 (Na: 1) - Ternary Cocrystal Structure of Alkanesulfonate Monooxygenase Msud From Pseudomonas Fluorescens
  30. 7jx6 (Na: 4) - Structure of the Sars-Cov-2 ORF8 Encoded Accessory Protein
  31. 7jxa (Na: 3) - Crystal Structure of Native Bovine Arrestin 1 in Complex with Inositol 1,4,5-Triphosphate
  32. 7jxf (Na: 3) - E. Coli Tsase Complex with A Bi-Substrate Reaction Intermediate Diastereomer Analog
  33. 7jxn (Na: 1) - Beta Hairpin Derived From ABETA17-36 with An F20CHA Mutation
    Other atoms: Cl (2);
  34. 7jxx (Na: 3) - Structure of TTBK1 Kinase Domain in Complex with Compound 3
  35. 7jyc (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease (3CLPRO/Mpro) in Complex with Covalent Inhibitor Narlaprevir
  36. 7jyw (Na: 2) - Crystal Structure of Hla A*2402 in Complex with Tyqwiirnw, An 9-Mer Influenza Epitope
    Other atoms: Ca (1); Ni (1);
  37. 7jyy (Na: 3) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).
    Other atoms: Mg (2); Zn (4); Cl (1);
  38. 7jz0 (Na: 4) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1) and S-Adenosyl-L-Homocysteine (Sah).
    Other atoms: Zn (4); Cl (7);
  39. 7jz2 (Na: 3) - Succinate: Quinone Oxidoreductase Sqr From E.Coli K12
    Other atoms: Fe (30);
  40. 7k15 (Na: 1) - Crystal Structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist Mk-D-046
    Other atoms: F (1);
Page generated: Tue Feb 25 11:40:39 2025

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