Atomistry » Sodium » PDB 7icv-8icx » 7jgk
Atomistry »
  Sodium »
    PDB 7icv-8icx »
      7jgk »

Sodium in PDB 7jgk: Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K

Enzymatic activity of Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K

All present enzymatic activity of Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K, PDB code: 7jgk was solved by J.B.Bailey, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.77 / 2.68
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 155.990, 155.990, 155.990, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 24.4

Other elements in 7jgk:

The structure of Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K also contains other interesting chemical elements:

Nickel (Ni) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K (pdb code 7jgk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K, PDB code: 7jgk:

Sodium binding site 1 out of 1 in 7jgk

Go back to Sodium Binding Sites List in 7jgk
Sodium binding site 1 out of 1 in the Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:61.1
occ:0.33
OE1 A:GLU134 2.1 79.1 1.0
OD1 A:ASP131 3.0 90.0 1.0
CD A:GLU134 3.0 72.6 1.0
OE2 A:GLU134 3.2 77.5 1.0
CG A:ASP131 4.0 81.4 1.0
CB A:ASP131 4.4 69.8 1.0
CG A:GLU134 4.4 56.8 1.0
CA A:ASP131 4.7 64.7 1.0
CB A:GLU134 4.8 54.8 1.0

Reference:

J.B.Bailey, F.A.Tezcan. Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks. J.Am.Chem.Soc. V. 142 17265 2020.
ISSN: ESSN 1520-5126
PubMed: 32972136
DOI: 10.1021/JACS.0C07835
Page generated: Tue Dec 15 18:01:52 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy