Sodium in PDB 7jtj: Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase

The structure of Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase, PDB code: 7jtj was solved by Y.Xia, A.D.Gnann, D.P.Dowling, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.80 / 1.94
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.29, 89.29, 140.07, 90, 90, 90
R / Rfree (%)	18 / 21.7

The binding sites of Sodium atom in the Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase (pdb code 7jtj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase, PDB code: 7jtj:

Sodium binding site 1 out of 1 in the Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2000 b:27.3 occ:1.00 O A:GLN1855 2.3 26.6 1.0 OD1 A:ASN1621 2.3 25.1 1.0 O A:HOH2242 2.4 40.2 1.0 O A:SER1520 2.6 21.6 1.0 O A:HIS1521 2.8 21.7 1.0 O A:HOH2357 2.8 35.0 1.0 C A:SER1520 3.2 24.0 1.0 CG A:ASN1621 3.3 23.9 1.0 C A:GLN1855 3.4 25.7 1.0 C A:HIS1521 3.4 27.3 1.0 N A:GLN1855 3.6 21.8 1.0 CB A:ASN1621 3.7 21.8 1.0 N A:HIS1521 3.8 25.4 1.0 CA A:HIS1521 4.0 25.2 1.0 CA A:SER1520 4.0 23.7 1.0 CB A:SER1854 4.1 27.3 1.0 CA A:GLN1855 4.1 28.5 1.0 OG1 A:THR1856 4.1 29.3 1.0 N A:PHE1522 4.3 20.2 1.0 C A:SER1854 4.4 26.4 1.0 ND2 A:ASN1621 4.4 24.4 1.0 N A:THR1856 4.5 23.4 1.0 CA A:SER1854 4.5 21.8 1.0 O A:HOH2157 4.6 36.7 1.0 CB A:SER1520 4.6 24.9 1.0 CA A:PHE1522 4.7 20.3 1.0 OG A:SER1854 4.7 29.6 1.0 CB A:GLN1855 4.7 30.9 1.0 CB A:PHE1522 4.7 21.8 1.0 N A:ASN1621 4.7 20.0 1.0 CA A:THR1856 4.8 24.7 1.0 CA A:ASN1621 4.9 20.3 1.0

Y.Xia, Y.Xia, A.D.Gnann, D.P.Dowling. N/A N/A.