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Sodium in PDB, part 244 (files: 9721-9760), PDB 7k97-7kt5

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9721-9760 (PDB 7k97-7kt5).
  1. 7k97 (Na: 2) - Human Dna Polymerase Beta Dgdp Product Complex with MN2+
    Other atoms: Mn (8);
  2. 7kb1 (Na: 1) - Complex of O-Acety-L-Homoserine Aminocarboxypropyltransferase (Mety) From Thermotoga Maritima and A Key Reaction Intermediate
    Other atoms: Mg (1);
  3. 7kbu (Na: 1) - Structure of Hevin Fs-Ec
    Other atoms: Cl (4); Ca (6);
  4. 7kds (Na: 1) - Crystal Structure of Acetyl-Coa Synthetase 2 in Complex with Adenosine-5'-Propylphosphate From Candida Albicans
  5. 7ke1 (Na: 1) - Factor H Enhancing Human Antibody Fragment (Fab) to Meningococcal Factor H Binding Protein
    Other atoms: Cl (1);
  6. 7kgp (Na: 4) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N316-324
    Other atoms: Cd (2);
  7. 7kgt (Na: 1) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N226-234
    Other atoms: Cd (2);
  8. 7kia (Na: 2) - Crystal Structure of FGFR2 Kinase Domain Gatekeeper Mutant V564F in Complex with Covalent Compound 19
  9. 7kk8 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81T with Bromide
    Other atoms: Br (2); F (1);
  10. 7kk9 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A/T82A with Bromide
    Other atoms: Br (2);
  11. 7kka (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A with Bromide
    Other atoms: Br (2); F (2);
  12. 7kkb (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81C with Bromide
    Other atoms: Br (2); F (2);
  13. 7kkg (Na: 3) - Dihydrodipicolinate Synthase (Dhdps) From C.Jejuni, N84D Mutant with Pyruvate Bound in the Active Site and L-Lysine Bound at the Allosteric Site
    Other atoms: Mg (21);
  14. 7kkh (Na: 2) - P1A4 Fab in Complex with ARS1620
    Other atoms: Cl (1); F (2);
  15. 7kkr (Na: 1) - Fluoride Channel Fluc-EC2 Wild-Type with Bromide
    Other atoms: Br (2);
  16. 7km6 (Na: 2) - APOBEC3B Antibody 5G7 Fv-Clasp
    Other atoms: Cl (3);
  17. 7kme (Na: 2) - Crystal Structure of Human Alpha-Thrombin Inhibited with SEL2711.
  18. 7kmj (Na: 3) - Hsa Siglec and Unique Domains in Complex with Sialyl Lewis C
  19. 7kn8 (Na: 2) - Crystal Structure of the GH74 Xyloglucanase From Xanthomonas Campestris (XCC1752)
    Other atoms: I (14);
  20. 7knf (Na: 4) - 1.80A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-1 Nhoh)
    Other atoms: Zn (4);
  21. 7kng (Na: 4) - 2.10A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-2 Y7F)
    Other atoms: Zn (4); Cl (4);
  22. 7knk (Na: 1) - Structure of Hen Egg-White Lysozyme Grown with Kitchen Recipe
    Other atoms: Cl (1);
  23. 7kom (Na: 1) - High Resolution Crystal Structure of Putative Pterin Binding Protein Prur (VV2_1280) From Vibrio Vulnificus CMCP6
  24. 7kos (Na: 5) - 1.50 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
  25. 7kou (Na: 10) - 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
    Other atoms: Cl (2);
  26. 7krg (Na: 4) - Crystal Structure of Mannitol Dehydrogenase (Chmdh) From Cladosporium Herbarum in Complex with Nadp+ and Na
  27. 7kss (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (20MIN)
    Other atoms: Ca (2); Cl (1);
  28. 7kst (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Reaction State Ternary Complex, 10 Mm MN2+ (2MIN)
    Other atoms: Mn (6);
  29. 7ksu (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (4MIN)
    Other atoms: Mn (7);
  30. 7ksv (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MN2+ (960MIN)
    Other atoms: Mn (6);
  31. 7ksw (Na: 1) - Dna Polymerase Mu, Dgtp:Ct Reaction State Ternary Complex, 10 Mm MG2+ (10MIN)
    Other atoms: Cl (1); Mg (3);
  32. 7ksx (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MG2+ (30MIN)
    Other atoms: Mg (1);
  33. 7ksy (Na: 2) - Dna Polymerase Mu, Dgtp:Ct Product State Ternary Complex, 10 Mm MG2+ (960MIN)
    Other atoms: Mg (1);
  34. 7ksz (Na: 1) - Dna Polymerase Mu, Dgtp:at Pre-Catalytic Ground State Ternary Complex, 10 Mm CA2+ (960MIN)
    Other atoms: Ca (2);
  35. 7kt0 (Na: 1) - Dna Polymerase Mu, Dgtp:at Ground State Ternary Complex, 50 Mm MG2+ (60MIN)
    Other atoms: Mg (2); Cl (1);
  36. 7kt1 (Na: 1) - Dna Polymerase Mu, Dgtp:at Reaction State Ternary Complex, 50 Mm MN2+ (180MIN)
    Other atoms: Cl (1); Mn (6);
  37. 7kt2 (Na: 1) - Dna Polymerase Mu, Dgtp:at Product State Ternary Complex, 50 Mm MN2+ (225MIN)
    Other atoms: Mn (7);
  38. 7kt3 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Pre-Catalytic Ground State Ternary Complex, 20 Mm CA2+ (120MIN)
    Other atoms: Cl (3); Ca (3);
  39. 7kt4 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Reaction State Ternary Complex, 10 Mm MN2+ (30MIN)
    Other atoms: Mn (4); Cl (2);
  40. 7kt5 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MN2+ (120MIN)
    Other atoms: Mn (7); Cl (1);
Page generated: Fri Jul 28 12:34:38 2023

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