Sodium in PDB, part 229 (files: 9121-9160),
PDB 6xbh-6xyd
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9121-9160 (PDB 6xbh-6xyd).
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6xbh (Na: 1) - Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease in Complex with Inhibitor UAW247
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6xbi (Na: 1) - Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease in Complex with Inhibitor UAW248
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6xd4 (Na: 1) - Cdc-Like Protein
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6xdf (Na: 2) - Crystal Structure of IRE1A in Complex with G-4100
Other atoms:
F (1);
Cl (1);
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6xep (Na: 1) - Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A
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6xeu (Na: 4) - Cryoem Structure of GIRK2PIP2* - G Protein-Gated Inwardly Rectifying Potassium Channel GIRK2 with PIP2
Other atoms:
K (8);
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6xev (Na: 4) - Cryoem Structure of GIRK2-PIP2/Chs - G Protein-Gated Inwardly Rectifying Potassium Channel GIRK2 with Modulators Cholesteryl Hemisuccinate and PIP2
Other atoms:
K (13);
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6xex (Na: 2) - Structure of Serratia Marcescens 2,3-Butanediol Dehydrogenase Mutant Q247A/V139Q
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6xfj (Na: 1) - Crystal Structure of the Type III Secretion Pilotin Invh
Other atoms:
Cd (19);
Cl (18);
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6xfr (Na: 2) - Metallo-Beta-Lactamase From Pontibacter Korlensis
Other atoms:
Zn (16);
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6xk2 (Na: 3) - Crystal Structure of Ribokinase From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Adp
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6xkg (Na: 2) - Crystal Structure of 3-O-Sulfotransferase Isoform 3 in Complex with 8MER Oligosaccharide with 6S Sulfation
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6xl8 (Na: 2) - Crystal Structure of 3-O-Sulfotransferase Isoform 3 in Complex with 8MER Oligosaccharide with No 6S Sulfation
Other atoms:
I (9);
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6xlw (Na: 2) - Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence
Other atoms:
Br (1);
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6xnc (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with L-Tryptophan and D-Glycerol-3-Phosphate
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6xne (Na: 6) - GCN4-P1 Peptide Trimer with P-Methylphenylalanine Residue at Position 16 (Me-F16)
Other atoms:
Mg (1);
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6xnf (Na: 4) - GCN4-P1 Peptide Trimer with Tetrafluoroiodophenylalanine Residue at Position 16 (Tfi-F16)
Other atoms:
F (8);
I (2);
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6xnl (Na: 2) - GCN4-P1 Peptide Trimer with Iodo-Phenylalanine Residue at Position 16 (Ipf-F16)
Other atoms:
I (1);
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6xnm (Na: 7) - GCN4-P1 Peptide Trimer with Tyrosine Residue at Position 16
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6xoy (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with D-Tryptophan and D-Glycerol-3-Phosphate
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6xpb (Na: 1) - Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule
Other atoms:
Cl (2);
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6xpc (Na: 1) - Structure of Human GGT1 in Complex with Full Gsh Molecule
Other atoms:
Cl (2);
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6xph (Na: 1) - Cutr Dimer with Domain Swap
Other atoms:
K (2);
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6xpm (Na: 1) - Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature
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6xqp (Na: 1) - Structure of Human D462-E4 Tcr in Complex with Human MR1-5-Op-Ru
Other atoms:
Br (2);
Cl (4);
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6xr0 (Na: 1) - Crystal Structure of Human Melanotransferrin in Complex with SC57.32 Fab
Other atoms:
Mg (1);
Fe (1);
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6xrh (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with Oxindolyl-L- Alanine and D-Glycerol-3-Phosphate
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6xro (Na: 2) - Crystal Structure of Glpg in Complex with Peptide Boronate Inhibitor, Ac-Krfrsmqysa-B(Oh)2
Other atoms:
Cl (2);
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6xrx (Na: 2) - Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion
Other atoms:
Cl (2);
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6xsn (Na: 1) - Crystal Structure of Nhp VD20.5A4 Fab in Complex with 16055 V1V2 1FD6 Scaffold
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6xso (Na: 1) - GH5-4 Broad Specificity Endoglucanase From An Uncultured Bacterium
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6xt0 (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with Dioxindolyl- L-Alanine and D-Glycerol-3-Phosphate
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6xtg (Na: 1) - Ab 1116NS19.9 Bound to CA19-9
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6xus (Na: 2) - Rna Dodecamer with A 6-Hydrazino-2-Aminopurine Modified Base
Other atoms:
Mg (1);
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6xwb (Na: 2) - Crystal Structure of An R-Selective Transaminase From Thermomyces Stellatus.
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6xwd (Na: 2) - 14-3-3 Sigma Bound to Canonical Mono-Phosphorylated Aminopeptidase N (Apn, CD13) Binding Motif
Other atoms:
Mg (2);
Ca (1);
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6xwm (Na: 4) - Mechanism of Substrate Release in Neurotransmitter:Sodium Symporters: the Structure of Leut in An Inward-Facing Occluded Conformation
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6xxq (Na: 2) - Crystal Structure of Spectinomycin Adenyltransferase Aad(9) From Enterococcus Faecialis with Atp and Spectinomycin
Other atoms:
Mg (3);
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6xya (Na: 1) - Cap-Binding Domain of Sftsv L Protein
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6xyd (Na: 1) - Crystal Structure of Q4D6Q6, A Conserved Kinetoplastid-Specific Protein From Trypanosoma Cruzi
Other atoms:
Mg (2);
Cl (3);
Page generated: Thu Dec 28 11:28:48 2023
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