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Sodium in PDB, part 229 (files: 9121-9160), PDB 6xdf-6xyx

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9121-9160 (PDB 6xdf-6xyx).
  1. 6xdf (Na: 2) - Crystal Structure of IRE1A in Complex with G-4100
    Other atoms: F (1); Cl (1);
  2. 6xep (Na: 1) - Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A
  3. 6xeu (Na: 4) - Cryoem Structure of GIRK2PIP2* - G Protein-Gated Inwardly Rectifying Potassium Channel GIRK2 with PIP2
    Other atoms: K (8);
  4. 6xev (Na: 4) - Cryoem Structure of GIRK2-PIP2/Chs - G Protein-Gated Inwardly Rectifying Potassium Channel GIRK2 with Modulators Cholesteryl Hemisuccinate and PIP2
    Other atoms: K (13);
  5. 6xex (Na: 2) - Structure of Serratia Marcescens 2,3-Butanediol Dehydrogenase Mutant Q247A/V139Q
  6. 6xfj (Na: 1) - Crystal Structure of the Type III Secretion Pilotin Invh
    Other atoms: Cd (19); Cl (18);
  7. 6xfr (Na: 2) - Metallo-Beta-Lactamase From Pontibacter Korlensis
    Other atoms: Zn (16);
  8. 6xk2 (Na: 3) - Crystal Structure of Ribokinase From Cryptococcus Neoformans Var. Grubii Serotype A in Complex with Adp
  9. 6xkg (Na: 2) - Crystal Structure of 3-O-Sulfotransferase Isoform 3 in Complex with 8MER Oligosaccharide with 6S Sulfation
  10. 6xl8 (Na: 2) - Crystal Structure of 3-O-Sulfotransferase Isoform 3 in Complex with 8MER Oligosaccharide with No 6S Sulfation
    Other atoms: I (9);
  11. 6xlw (Na: 2) - Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence
    Other atoms: Br (1);
  12. 6xnc (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with L-Tryptophan and D-Glycerol-3-Phosphate
  13. 6xne (Na: 6) - GCN4-P1 Peptide Trimer with P-Methylphenylalanine Residue at Position 16 (Me-F16)
    Other atoms: Mg (1);
  14. 6xnf (Na: 4) - GCN4-P1 Peptide Trimer with Tetrafluoroiodophenylalanine Residue at Position 16 (Tfi-F16)
    Other atoms: F (8); I (2);
  15. 6xnl (Na: 2) - GCN4-P1 Peptide Trimer with Iodo-Phenylalanine Residue at Position 16 (Ipf-F16)
    Other atoms: I (1);
  16. 6xnm (Na: 7) - GCN4-P1 Peptide Trimer with Tyrosine Residue at Position 16
  17. 6xoy (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with D-Tryptophan and D-Glycerol-3-Phosphate
  18. 6xpb (Na: 1) - Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule
    Other atoms: Cl (2);
  19. 6xpc (Na: 1) - Structure of Human GGT1 in Complex with Full Gsh Molecule
    Other atoms: Cl (2);
  20. 6xph (Na: 1) - Cutr Dimer with Domain Swap
    Other atoms: K (2);
  21. 6xpm (Na: 1) - Crystal Structure of Sialate O-Acetylesterase From Bacteroides Vulgatus with Microfluidics Crystals at Room Temperature
  22. 6xqp (Na: 1) - Structure of Human D462-E4 Tcr in Complex with Human MR1-5-Op-Ru
    Other atoms: Br (2); Cl (4);
  23. 6xr0 (Na: 1) - Crystal Structure of Human Melanotransferrin in Complex with SC57.32 Fab
    Other atoms: Mg (1); Fe (1);
  24. 6xrh (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with Oxindolyl-L- Alanine and D-Glycerol-3-Phosphate
  25. 6xro (Na: 2) - Crystal Structure of Glpg in Complex with Peptide Boronate Inhibitor, Ac-Krfrsmqysa-B(Oh)2
    Other atoms: Cl (2);
  26. 6xrx (Na: 2) - Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion
    Other atoms: Cl (2);
  27. 6xsn (Na: 1) - Crystal Structure of Nhp VD20.5A4 Fab in Complex with 16055 V1V2 1FD6 Scaffold
  28. 6xso (Na: 1) - GH5-4 Broad Specificity Endoglucanase From An Uncultured Bacterium
  29. 6xt0 (Na: 1) - Salmonella Typhimurium Tryptophan Synthase Complexed with Dioxindolyl- L-Alanine and D-Glycerol-3-Phosphate
  30. 6xtg (Na: 1) - Ab 1116NS19.9 Bound to CA19-9
  31. 6xus (Na: 2) - Rna Dodecamer with A 6-Hydrazino-2-Aminopurine Modified Base
    Other atoms: Mg (1);
  32. 6xwb (Na: 2) - Crystal Structure of An R-Selective Transaminase From Thermomyces Stellatus.
  33. 6xwd (Na: 2) - 14-3-3 Sigma Bound to Canonical Mono-Phosphorylated Aminopeptidase N (Apn, CD13) Binding Motif
    Other atoms: Mg (2); Ca (1);
  34. 6xwm (Na: 4) - Mechanism of Substrate Release in Neurotransmitter:Sodium Symporters: the Structure of Leut in An Inward-Facing Occluded Conformation
  35. 6xxq (Na: 2) - Crystal Structure of Spectinomycin Adenyltransferase Aad(9) From Enterococcus Faecialis with Atp and Spectinomycin
    Other atoms: Mg (3);
  36. 6xya (Na: 1) - Cap-Binding Domain of Sftsv L Protein
  37. 6xyd (Na: 1) - Crystal Structure of Q4D6Q6, A Conserved Kinetoplastid-Specific Protein From Trypanosoma Cruzi
    Other atoms: Mg (2); Cl (3);
  38. 6xyf (Na: 1) - Nanobody 22
  39. 6xyt (Na: 10) - Crystal Structure of the O-State of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
  40. 6xyx (Na: 2) - Crystal Structure of the BCL6 Btb Domain in Complex with the NCOR1 Bbd Corepressor Peptide
Page generated: Sat Sep 25 14:52:21 2021

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