Sodium in PDB 6xlw: Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence

The structure of Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence, PDB code: 6xlw was solved by D.Maji, J.L.Jenkins, C.L.Kielkopf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.71 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.398, 62.731, 77.427, 90.00, 90.00, 90.00
R / Rfree (%)	13.1 / 15.3

The structure of Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Sodium atom in the Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence (pdb code 6xlw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence, PDB code: 6xlw:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:26.8 occ:1.00 O A:HOH688 2.3 28.1 1.0 O A:HOH699 2.3 31.2 1.0 O A:HOH656 2.4 22.6 1.0 O A:HOH723 2.4 31.4 1.0 O B:HOH114 2.4 23.7 1.0 OG A:SER294 2.5 25.1 1.0 O B:HOH133 3.3 30.2 1.0 HB3 A:SER294 3.4 27.7 1.0 H A:SER294 3.4 22.1 1.0 CB A:SER294 3.5 23.1 1.0 N A:SER294 4.2 18.4 1.0 HB2 A:SER294 4.2 27.7 1.0 O A:HOH518 4.3 32.4 1.0 O B:HOH129 4.4 42.7 1.0 O B:HOH109 4.4 21.6 1.0 CA A:SER294 4.5 20.3 1.0 O A:HOH559 4.5 35.6 1.0 O A:HOH572 4.6 22.1 1.0 OP1 B:U5 4.7 17.6 1.0 H A:ALA295 4.7 25.9 1.0 HA A:ASP293 4.9 20.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:42.0 occ:1.00 O A:HOH714 3.1 40.3 1.0 HA3 A:GLY177 3.2 26.9 1.0 O A:GLY176 3.4 24.4 1.0 CA A:GLY177 4.2 22.4 1.0 C A:GLY176 4.2 22.1 1.0 O A:HOH538 4.4 38.9 1.0 N A:GLY177 4.6 21.1 1.0 O A:GLY177 4.7 25.0 1.0 HA2 A:GLY177 4.7 26.9 1.0 C A:GLY177 4.8 22.9 1.0

D.Maji, J.L.Jenkins, C.L.Kielkopf. Crystal Structure of U2AF65 Bound to Adml Splice Site Sequence To Be Published.