Sodium in PDB, part 226 (files: 9001-9040),
PDB 6vf7-6w0r
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9001-9040 (PDB 6vf7-6w0r).
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6vf7 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Other atoms:
Mn (8);
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6vf8 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Pre-Catalytic Ternary Complex, 20 Mm CA2+ (120 Min)
Other atoms:
Ca (2);
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6vf9 (Na: 2) - Dna Polymerase Mu, 8-Oxorgtp:Ct Ternary Complex, 50 Mm MG2+ (2160 Min)
Other atoms:
Cl (1);
Mg (1);
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6vfa (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
Other atoms:
Mn (8);
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6vfb (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Reaction State Ternary Complex, 50 Mm MN2+ (960 Min)
Other atoms:
Mn (7);
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6vfc (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Product State Ternary Complex, 50 Mm MN2+ (2160 Min)
Other atoms:
Mn (8);
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6vfr (Na: 2) - Crystal Structure of Human Protocadherin 18 EC1-EC4
Other atoms:
Ca (18);
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6vfz (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Nadph and Ag-881 (Vorasidenib) Inhibitor.
Other atoms:
F (12);
Ca (2);
Cl (2);
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6vg1 (Na: 2) - Xenopus Protocadherin 8.1 EC1-6
Other atoms:
Ca (30);
Cl (2);
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6vh9 (Na: 4) - Fphf, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases F, Apo Form
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6vj7 (Na: 3) - Structural Elements That Modulate the Substrate Specificity of Plant Purple Acid Phosphatases
Other atoms:
Zn (4);
Fe (4);
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6vjn (Na: 6) - Structure of Nhp D11A.B5FAB in Complex with 16055 V2B Peptide
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6vjp (Na: 2) - Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain
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6vlb (Na: 2) - Crystal Structure of Ligand-Free Udp-Glcnac 2-Epimerase From Neisseria Meningitidis
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6vlw (Na: 1) - Crystal Structure of 426COD in Complex with VRC01 Fab
Other atoms:
Cl (8);
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6vmw (Na: 1) - Crystal Structure of the F316A Mutant of Goxa Soaked with Glycine
Other atoms:
Mg (4);
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6vnd (Na: 3) - Quaternary Complex of Human Dihydroorotate Dehydrogenase (Dhodh) with Flavin Mononucleotide (Fmn), Orotic Acid and Ag-636
Other atoms:
Cl (1);
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6vnt (Na: 1) - Tryptophan Synthase in Complex with Inhibitor N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Alpha-Site, Aminoacrylate at the Beta Site, and Sodium Ion at the Metal Coordination Site at 1.25 Angstrom Resolution
Other atoms:
F (3);
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6vo6 (Na: 1) - Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp
Other atoms:
Cl (1);
-
6vod (Na: 1) - Hiv-1 Wild Type Protease with Grl-052-16A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand
Other atoms:
Cl (2);
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6voe (Na: 1) - Hiv-1 Wild Type Protease with Grl-019-17A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand and A Aminobenzothiazole(Abt)-Based P2'-Ligand
Other atoms:
Cl (2);
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6vr4 (Na: 6) - Virion-Packaged Dna-Dependent Rna Polymerase of Crass-Like Phage PHI14:2
Other atoms:
Cl (21);
-
6vrf (Na: 4) - Adp Bound TTBK2 Kinase Domain
Other atoms:
Mg (2);
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6vsp (Na: 2) - Structure of Serratia Marcescens 2,3-Butanediol Dehydrogenase Mutant Q247A
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6vsu (Na: 24) - Arginase From Arabidopsis Thaliana in Complex with Ornithine
Other atoms:
Mn (48);
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6vtx (Na: 1) - Crystal Structure of Human KLF4 Zinc Finger Dna Binding Domain in Complex with Nanog Dna
Other atoms:
Zn (3);
-
6vue (Na: 2) - Wild-Type Choline Tma Lyase in Complex with 1-Methyl-1,2,3,6- Tetrahydropyridin-3-Ol
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6vur (Na: 2) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT366
Other atoms:
Cl (3);
-
6vut (Na: 3) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT392
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6vuw (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT368
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6vux (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT388
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6vuy (Na: 4) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT358
Other atoms:
Mg (1);
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6vv1 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT384
-
6vv2 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1348
Other atoms:
Cl (1);
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6vwx (Na: 2) - Nachbac in Lipid Nanodisc
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6vxv (Na: 1) - Crystal Structure of Cyclo-L-Trp-L-Pro-Bound Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
Other atoms:
Fe (1);
Ca (1);
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6vyd (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Benzyltriethylammonium Cation
Other atoms:
Mg (6);
Cl (3);
-
6vza (Na: 2) - Crystal Structure of Cytochrome P450 NASF5053 Q65I-A86G Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro-Bound State
Other atoms:
Fe (1);
Ca (1);
Cl (1);
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6vzb (Na: 1) - Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State
Other atoms:
Fe (1);
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6w0r (Na: 1) - Human 8-Oxoguanine Glycosylase Interrogating Fully Intrahelical Undamaged Dna
Page generated: Wed Nov 13 13:05:50 2024
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