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Sodium in PDB, part 226 (files: 9001-9040), PDB 6vf3-6vxv

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9001-9040 (PDB 6vf3-6vxv).
  1. 6vf3 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
    Other atoms: Mn (8);
  2. 6vf4 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MN2+ (30 Min)
    Other atoms: Mn (5);
  3. 6vf5 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MN2+ (120 Min)
    Other atoms: Mn (7); Cl (1);
  4. 6vf6 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MN2+ (960 Min)
    Other atoms: Mn (8);
  5. 6vf7 (Na: 1) - Dna Polymerase Mu, 8-Oxodgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
    Other atoms: Mn (8);
  6. 6vf8 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Pre-Catalytic Ternary Complex, 20 Mm CA2+ (120 Min)
    Other atoms: Ca (2);
  7. 6vf9 (Na: 2) - Dna Polymerase Mu, 8-Oxorgtp:Ct Ternary Complex, 50 Mm MG2+ (2160 Min)
    Other atoms: Cl (1); Mg (1);
  8. 6vfa (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
    Other atoms: Mn (8);
  9. 6vfb (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Reaction State Ternary Complex, 50 Mm MN2+ (960 Min)
    Other atoms: Mn (7);
  10. 6vfc (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:Ct Product State Ternary Complex, 50 Mm MN2+ (2160 Min)
    Other atoms: Mn (8);
  11. 6vfr (Na: 2) - Crystal Structure of Human Protocadherin 18 EC1-EC4
    Other atoms: Ca (18);
  12. 6vfz (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Nadph and Ag-881 (Vorasidenib) Inhibitor.
    Other atoms: F (12); Ca (2); Cl (2);
  13. 6vg1 (Na: 2) - Xenopus Protocadherin 8.1 EC1-6
    Other atoms: Ca (30); Cl (2);
  14. 6vh9 (Na: 4) - Fphf, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases F, Apo Form
  15. 6vj7 (Na: 3) - Structural Elements That Modulate the Substrate Specificity of Plant Purple Acid Phosphatases
    Other atoms: Zn (4); Fe (4);
  16. 6vjn (Na: 6) - Structure of Nhp D11A.B5FAB in Complex with 16055 V2B Peptide
  17. 6vjp (Na: 2) - Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain
  18. 6vlb (Na: 2) - Crystal Structure of Ligand-Free Udp-Glcnac 2-Epimerase From Neisseria Meningitidis
  19. 6vlw (Na: 1) - Crystal Structure of 426COD in Complex with VRC01 Fab
    Other atoms: Cl (8);
  20. 6vmw (Na: 1) - Crystal Structure of the F316A Mutant of Goxa Soaked with Glycine
    Other atoms: Mg (4);
  21. 6vnd (Na: 3) - Quaternary Complex of Human Dihydroorotate Dehydrogenase (Dhodh) with Flavin Mononucleotide (Fmn), Orotic Acid and Ag-636
    Other atoms: Cl (1);
  22. 6vnt (Na: 1) - Tryptophan Synthase in Complex with Inhibitor N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Alpha-Site, Aminoacrylate at the Beta Site, and Sodium Ion at the Metal Coordination Site at 1.25 Angstrom Resolution
    Other atoms: F (3);
  23. 6vo6 (Na: 1) - Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp
    Other atoms: Cl (1);
  24. 6vod (Na: 1) - Hiv-1 Wild Type Protease with Grl-052-16A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand
    Other atoms: Cl (2);
  25. 6voe (Na: 1) - Hiv-1 Wild Type Protease with Grl-019-17A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand and A Aminobenzothiazole(Abt)-Based P2'-Ligand
    Other atoms: Cl (2);
  26. 6vr4 (Na: 6) - Virion-Packaged Dna-Dependent Rna Polymerase of Crass-Like Phage PHI14:2
    Other atoms: Cl (21);
  27. 6vrf (Na: 4) - Adp Bound TTBK2 Kinase Domain
    Other atoms: Mg (2);
  28. 6vsp (Na: 2) - Structure of Serratia Marcescens 2,3-Butanediol Dehydrogenase Mutant Q247A
  29. 6vsu (Na: 24) - Arginase From Arabidopsis Thaliana in Complex with Ornithine
    Other atoms: Mn (48);
  30. 6vtx (Na: 1) - Crystal Structure of Human KLF4 Zinc Finger Dna Binding Domain in Complex with Nanog Dna
    Other atoms: Zn (3);
  31. 6vue (Na: 2) - Wild-Type Choline Tma Lyase in Complex with 1-Methyl-1,2,3,6- Tetrahydropyridin-3-Ol
  32. 6vur (Na: 2) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT366
    Other atoms: Cl (3);
  33. 6vut (Na: 3) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT392
  34. 6vuw (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT368
  35. 6vux (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT388
  36. 6vuy (Na: 4) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT358
    Other atoms: Mg (1);
  37. 6vv1 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT384
  38. 6vv2 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1348
    Other atoms: Cl (1);
  39. 6vwx (Na: 2) - Nachbac in Lipid Nanodisc
  40. 6vxv (Na: 1) - Crystal Structure of Cyclo-L-Trp-L-Pro-Bound Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
    Other atoms: Fe (1); Ca (1);
Page generated: Fri Dec 24 09:54:33 2021

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