Sodium in PDB 6vwx: Nachbac in Lipid Nanodisc

The binding sites of Sodium atom in the Nachbac in Lipid Nanodisc (pdb code 6vwx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Nachbac in Lipid Nanodisc, PDB code: 6vwx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Nachbac in Lipid Nanodisc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Nachbac in Lipid Nanodisc within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:30.0 occ:1.00 N D:SER192 4.6 51.6 1.0 N E:SER192 4.6 51.6 1.0 N F:SER192 4.6 51.6 1.0 N A:SER192 4.6 51.6 1.0 O D:LEU190 4.8 49.7 1.0 O E:LEU190 4.8 49.7 1.0 O F:LEU190 4.8 49.7 1.0 O A:LEU190 4.8 49.7 1.0 CA D:GLU191 4.9 50.6 1.0 CA E:GLU191 4.9 50.6 1.0 CA F:GLU191 5.0 50.6 1.0 CA A:GLU191 5.0 50.6 1.0

Sodium binding site 2 out of 2 in the Nachbac in Lipid Nanodisc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Nachbac in Lipid Nanodisc within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:30.0 occ:1.00 O E:THR189 4.8 50.1 1.0 O D:THR189 4.8 50.1 1.0 O F:THR189 4.8 50.1 1.0 O A:THR189 4.9 50.1 1.0 O D:LEU190 4.9 49.7 1.0 O F:LEU190 4.9 49.7 1.0 O E:LEU190 4.9 49.7 1.0 O A:LEU190 4.9 49.7 1.0

S.Gao, W.C.Valinsky, N.C.On, P.R.Houlihan, Q.Qu, L.Liu, X.Pan, D.E.Clapham, N.Yan. Employing Nachbac For Cryo-Em Analysis of Toxin Action on Voltage-Gated Na+Channels in Nanodisc. Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 32513729
DOI: 10.1073/PNAS.1922903117