Sodium in PDB 6vzb: Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State

The structure of Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State, PDB code: 6vzb was solved by Z.Luo, X.Jia, C.Sun, X.Qu, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.73 / 1.68
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.236, 91.208, 93.460, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 20.3

The structure of Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State (pdb code 6vzb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State, PDB code: 6vzb:

Sodium binding site 1 out of 1 in the Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:17.1 occ:1.00 O A:HOH670 3.0 21.2 1.0 HA A:SER57 3.0 14.8 1.0 O A:HOH692 3.1 22.3 1.0 CB A:ARG345 3.6 19.4 1.0 HB3 A:SER57 3.6 14.2 1.0 HB2 A:SER57 3.6 14.2 1.0 HD2 A:HIS346 3.6 16.5 1.0 CA A:SER57 3.8 12.3 1.0 O A:HOH558 3.9 20.4 1.0 CB A:SER57 3.9 11.8 1.0 NE2 A:HIS346 3.9 15.0 1.0 CD2 A:HIS346 4.0 13.8 1.0 H A:ARG345 4.1 17.6 1.0 O A:HOH663 4.5 12.3 1.0 N A:SER57 4.6 11.1 1.0 O A:LEU54 4.7 15.2 1.0 N A:ARG345 4.7 14.7 1.0 CA A:ARG345 4.7 15.8 1.0 O A:PHE59 4.8 11.6 1.0 O A:HOH519 4.8 15.5 1.0 O A:SER57 4.8 13.1 1.0 C A:SER57 4.9 13.6 1.0 O A:ASP56 4.9 12.3 1.0 HE A:ARG290 5.0 15.8 1.0 CE1 A:HIS346 5.0 14.9 1.0

C.Sun, Z.Luo, W.Zhang, Z.Deng, M.Mobli, B.Kobe, X.Jia, X.Qu. Molecular Basis of Regio- and Stereo-Specificity in Biosynthesis of Bacterial Heterodimeric Diketopiperazines To Be Published.