Sodium in PDB, part 225 (files: 8961-9000),
PDB 6vea-6w3q
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8961-9000 (PDB 6vea-6w3q).
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6vea (Na: 1) - Structure of the Glutamate-Like Receptor GLR3.2 Ligand-Binding Domain in Complex with Glycine
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6vel (Na: 1) - Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB
Other atoms:
Ca (2);
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6vfr (Na: 2) - Crystal Structure of Human Protocadherin 18 EC1-EC4
Other atoms:
Ca (18);
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6vfz (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Nadph and Ag-881 (Vorasidenib) Inhibitor.
Other atoms:
F (12);
Ca (2);
Cl (2);
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6vg1 (Na: 2) - Xenopus Protocadherin 8.1 EC1-6
Other atoms:
Ca (30);
Cl (2);
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6vh9 (Na: 4) - Fphf, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases F, Apo Form
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6vj7 (Na: 3) - Structural Elements That Modulate the Substrate Specificity of Plant Purple Acid Phosphatases
Other atoms:
Zn (4);
Fe (4);
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6vjp (Na: 2) - Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain
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6vlb (Na: 2) - Crystal Structure of Ligand-Free Udp-Glcnac 2-Epimerase From Neisseria Meningitidis
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6vlw (Na: 1) - Crystal Structure of 426COD in Complex with VRC01 Fab
Other atoms:
Cl (8);
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6vmw (Na: 1) - Crystal Structure of the F316A Mutant of Goxa Soaked with Glycine
Other atoms:
Mg (4);
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6vnd (Na: 3) - Quaternary Complex of Human Dihydroorotate Dehydrogenase (Dhodh) with Flavin Mononucleotide (Fmn), Orotic Acid and Ag-636
Other atoms:
Cl (1);
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6vo6 (Na: 1) - Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp
Other atoms:
Cl (1);
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6vod (Na: 1) - Hiv-1 Wild Type Protease with Grl-052-16A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand
Other atoms:
Cl (2);
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6voe (Na: 1) - Hiv-1 Wild Type Protease with Grl-019-17A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand and A Aminobenzothiazole(Abt)-Based P2'-Ligand
Other atoms:
Cl (2);
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6vr4 (Na: 6) - Virion-Packaged Dna-Dependent Rna Polymerase of Crass-Like Phage PHI14:2
Other atoms:
Cl (21);
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6vrf (Na: 4) - Adp Bound TTBK2 Kinase Domain
Other atoms:
Mg (2);
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6vsu (Na: 24) - Arginase From Arabidopsis Thaliana in Complex with Ornithine
Other atoms:
Mn (48);
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6vue (Na: 2) - Wild-Type Choline Tma Lyase in Complex with 1-Methyl-1,2,3,6- Tetrahydropyridin-3-Ol
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6vur (Na: 2) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT366
Other atoms:
Cl (3);
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6vut (Na: 3) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT392
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6vuw (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT368
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6vux (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT388
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6vuy (Na: 4) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT358
Other atoms:
Mg (1);
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6vv1 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT384
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6vv2 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1348
Other atoms:
Cl (1);
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6vwx (Na: 2) - Nachbac in Lipid Nanodisc
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6vxv (Na: 1) - Crystal Structure of Cyclo-L-Trp-L-Pro-Bound Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
Other atoms:
Fe (1);
Ca (1);
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6vyd (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Benzyltriethylammonium Cation
Other atoms:
Mg (6);
Cl (3);
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6vza (Na: 2) - Crystal Structure of Cytochrome P450 NASF5053 Q65I-A86G Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro-Bound State
Other atoms:
Fe (1);
Ca (1);
Cl (1);
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6vzb (Na: 1) - Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State
Other atoms:
Fe (1);
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6w0r (Na: 1) - Human 8-Oxoguanine Glycosylase Interrogating Fully Intrahelical Undamaged Dna
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6w0s (Na: 2) - Crystal Structure of Substrate Free Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
Other atoms:
Br (4);
Fe (2);
Cl (6);
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6w1i (Na: 8) - Re-Interpretation of Ppgpp (G4P) Electron Density in the Deposited Crystal Structure of Xanthine Phosphoribosyltransferase (Xprt) (1Y0B).
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6w26 (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Imidazole
Other atoms:
Mg (6);
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6w2m (Na: 2) - Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
Other atoms:
Mg (2);
Cl (2);
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6w3l (Na: 2) - APE1 Exonuclease Substrate Complex Wild-Type
Other atoms:
Ca (1);
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6w3o (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 4-Methylisoleucine
Other atoms:
Cl (1);
-
6w3p (Na: 2) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with Beta-Methylnorleucine
Other atoms:
Cl (5);
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6w3q (Na: 1) - APE1 Exonuclease Substrate Complex L104R
Other atoms:
Ca (1);
Page generated: Thu Dec 17 13:13:28 2020
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