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Sodium in PDB, part 225 (files: 8961-9000), PDB 6v1a-6vf6

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8961-9000 (PDB 6v1a-6vf6).
  1. 6v1a (Na: 1) - Immune Receptor Complex
  2. 6v1q (Na: 1) - Two-Pore Channel 3
  3. 6v2t (Na: 1) - X-Ray Structure of A Sugar N-Formyltransferase From Shewanella Sp FDAARGOS_354
  4. 6v4s (Na: 7) - A Closed Pore Conformation of A Pentameic Ligand-Gated Ion Channel with Additional N-Terminal Domain
    Other atoms: Cl (5); Ca (5);
  5. 6v61 (Na: 2) - Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica in the Complex with the Inhibitor Captopril
    Other atoms: Cl (4); Zn (2);
  6. 6v64 (Na: 2) - Crystal Structure of Human Thrombin Bound to Ppack with Tryptophans Replaced By 5-F-Tryptophan
    Other atoms: F (9);
  7. 6v6g (Na: 1) - Crystal Structure of Ctx-M-14 E166A/P167S/D240G Beta-Lactamase
  8. 6v6z (Na: 8) - Crystal Structure of N-(4-((4-Methoxy-N-(2,2,2-Trifluoroethyl)Phenyl) Sulfonamido)Isoquinolin-1-Yl)-N-((4-Methoxyphenyl)Sulfonyl)Glycine Bound to Human KEAP1 Kelch Domain
  9. 6v7z (Na: 1) - Human CD1D Presenting Alpha-Galactosylceramide in Complex with Vhh Nanobody 1D22
    Other atoms: Cl (1);
  10. 6v8g (Na: 9) - Gltph Mutant - Y204L A345V V366A
  11. 6v8j (Na: 4) - Crystal Structure of Ara H 8.0201
  12. 6v8u (Na: 1) - Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs)
    Other atoms: Zn (3); Cl (1);
  13. 6v8y (Na: 2) - Structure of A Sodium Potassium Ion Channel
    Other atoms: K (3);
  14. 6v94 (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: F (1); Mg (1);
  15. 6v9f (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: Mg (1); Cl (1);
  16. 6v9j (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: F (1); Mg (1); Cl (1);
  17. 6v9l (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: F (1); Mg (1); Cl (1);
  18. 6v9m (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: F (1); Mg (1);
  19. 6v9n (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: Mg (1);
  20. 6v9o (Na: 1) - Expanding the Chemical Landscape of SOS1 Activators Using Fragment Based Methods
    Other atoms: Mg (1);
  21. 6vb1 (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
  22. 6vb2 (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
  23. 6vb3 (Na: 2) - Hla-B*15:01 Complexed with A Synthetic Peptide
  24. 6vb5 (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
  25. 6vb7 (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
  26. 6vbb (Na: 2) - 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii
    Other atoms: Cl (3);
  27. 6vce (Na: 1) - Hiv-1 Wild Type Protease with Grl-026-18A, A Crown-Like Tetrahydropyranotetrahydrofuran with A Bridged Methylene Group As A P2 Ligand
    Other atoms: F (4); Cl (6);
  28. 6vcf (Na: 2) - Crystal Structure of Nitrosotalea Devanaterra Carotenoid Cleavage Dioxygenase, Iron Form
    Other atoms: Fe (6); Cl (1);
  29. 6vcg (Na: 2) - Crystal Structure of Nitrosotalea Devanaterra Carotenoid Cleavage Dioxygenase, Cobalt Form
    Other atoms: Co (6); Cl (2);
  30. 6vch (Na: 2) - Crystal Structure of Nitrosotalea Devanaterra Carotenoid Cleavage Dioxygenase in Complex with 3-Hydroxy-Beta-Apo-14'-Carotenal
    Other atoms: Co (6); Cl (2);
  31. 6vea (Na: 1) - Structure of the Glutamate-Like Receptor GLR3.2 Ligand-Binding Domain in Complex with Glycine
  32. 6vel (Na: 1) - Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB
    Other atoms: Ca (2);
  33. 6vez (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Pre-Catalytic Ternary Complex, 20 Mm CA2+ (60 Min)
    Other atoms: Ca (3);
  34. 6vf0 (Na: 2) - Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min)
    Other atoms: Cl (1); Mg (2);
  35. 6vf1 (Na: 2) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min)
    Other atoms: Mg (2); Cl (1);
  36. 6vf2 (Na: 2) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (960 Min)
    Other atoms: Mg (1);
  37. 6vf3 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Ground State Ternary Complex, 50 Mm MN2+ (15 Min)
    Other atoms: Mn (8);
  38. 6vf4 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MN2+ (30 Min)
    Other atoms: Mn (5);
  39. 6vf5 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MN2+ (120 Min)
    Other atoms: Mn (7); Cl (1);
  40. 6vf6 (Na: 1) - Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MN2+ (960 Min)
    Other atoms: Mn (8);
Page generated: Sat Sep 25 14:52:07 2021

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