Atomistry » Sodium » PDB 6vea-6w3q
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Sodium in PDB, part 225 (files: 8961-9000), PDB 6vea-6w3q

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8961-9000 (PDB 6vea-6w3q).
  1. 6vea (Na: 1) - Structure of the Glutamate-Like Receptor GLR3.2 Ligand-Binding Domain in Complex with Glycine
  2. 6vel (Na: 1) - Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB
    Other atoms: Ca (2);
  3. 6vfr (Na: 2) - Crystal Structure of Human Protocadherin 18 EC1-EC4
    Other atoms: Ca (18);
  4. 6vfz (Na: 2) - Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with Nadph and Ag-881 (Vorasidenib) Inhibitor.
    Other atoms: F (12); Ca (2); Cl (2);
  5. 6vg1 (Na: 2) - Xenopus Protocadherin 8.1 EC1-6
    Other atoms: Ca (30); Cl (2);
  6. 6vh9 (Na: 4) - Fphf, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases F, Apo Form
  7. 6vj7 (Na: 3) - Structural Elements That Modulate the Substrate Specificity of Plant Purple Acid Phosphatases
    Other atoms: Zn (4); Fe (4);
  8. 6vjp (Na: 2) - Structure of Staphylococcus Aureus Peptidoglycan O-Acetyltransferase A (Oata) C-Terminal Catalytic Domain
  9. 6vlb (Na: 2) - Crystal Structure of Ligand-Free Udp-Glcnac 2-Epimerase From Neisseria Meningitidis
  10. 6vlw (Na: 1) - Crystal Structure of 426COD in Complex with VRC01 Fab
    Other atoms: Cl (8);
  11. 6vmw (Na: 1) - Crystal Structure of the F316A Mutant of Goxa Soaked with Glycine
    Other atoms: Mg (4);
  12. 6vnd (Na: 3) - Quaternary Complex of Human Dihydroorotate Dehydrogenase (Dhodh) with Flavin Mononucleotide (Fmn), Orotic Acid and Ag-636
    Other atoms: Cl (1);
  13. 6vo6 (Na: 1) - Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp
    Other atoms: Cl (1);
  14. 6vod (Na: 1) - Hiv-1 Wild Type Protease with Grl-052-16A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand
    Other atoms: Cl (2);
  15. 6voe (Na: 1) - Hiv-1 Wild Type Protease with Grl-019-17A, A Tricyclic Cyclohexane Fused Tetrahydrofuranofuran (Chf-Thf) Derivative As the P2 Ligand and A Aminobenzothiazole(Abt)-Based P2'-Ligand
    Other atoms: Cl (2);
  16. 6vr4 (Na: 6) - Virion-Packaged Dna-Dependent Rna Polymerase of Crass-Like Phage PHI14:2
    Other atoms: Cl (21);
  17. 6vrf (Na: 4) - Adp Bound TTBK2 Kinase Domain
    Other atoms: Mg (2);
  18. 6vsu (Na: 24) - Arginase From Arabidopsis Thaliana in Complex with Ornithine
    Other atoms: Mn (48);
  19. 6vue (Na: 2) - Wild-Type Choline Tma Lyase in Complex with 1-Methyl-1,2,3,6- Tetrahydropyridin-3-Ol
  20. 6vur (Na: 2) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT366
    Other atoms: Cl (3);
  21. 6vut (Na: 3) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT392
  22. 6vuw (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT368
  23. 6vux (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT388
  24. 6vuy (Na: 4) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT358
    Other atoms: Mg (1);
  25. 6vv1 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT384
  26. 6vv2 (Na: 1) - Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1348
    Other atoms: Cl (1);
  27. 6vwx (Na: 2) - Nachbac in Lipid Nanodisc
  28. 6vxv (Na: 1) - Crystal Structure of Cyclo-L-Trp-L-Pro-Bound Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
    Other atoms: Fe (1); Ca (1);
  29. 6vyd (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Benzyltriethylammonium Cation
    Other atoms: Mg (6); Cl (3);
  30. 6vza (Na: 2) - Crystal Structure of Cytochrome P450 NASF5053 Q65I-A86G Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro-Bound State
    Other atoms: Fe (1); Ca (1); Cl (1);
  31. 6vzb (Na: 1) - Crystal Structure of Cytochrome P450 NASF5053 S284A-V288A Mutant Variant From Streptomyces Sp. Nrrl F-5053 in the Cyclo-L-Trp-L-Pro- Bound State
    Other atoms: Fe (1);
  32. 6w0r (Na: 1) - Human 8-Oxoguanine Glycosylase Interrogating Fully Intrahelical Undamaged Dna
  33. 6w0s (Na: 2) - Crystal Structure of Substrate Free Cytochrome P450 NASF5053 From Streptomyces Sp. Nrrl F-5053
    Other atoms: Br (4); Fe (2); Cl (6);
  34. 6w1i (Na: 8) - Re-Interpretation of Ppgpp (G4P) Electron Density in the Deposited Crystal Structure of Xanthine Phosphoribosyltransferase (Xprt) (1Y0B).
  35. 6w26 (Na: 2) - Terpenoid Cyclase Fggs in Complex with Mg, Inorganic Pyrophosphate, and Imidazole
    Other atoms: Mg (6);
  36. 6w2m (Na: 2) - Abortive Ternary Complex Crystal Structure of Dna Polymerase Beta with 8OG-Dc Base Pair at the Primer Terminus and Flipped Out Da
    Other atoms: Mg (2); Cl (2);
  37. 6w3l (Na: 2) - APE1 Exonuclease Substrate Complex Wild-Type
    Other atoms: Ca (1);
  38. 6w3o (Na: 3) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with 4-Methylisoleucine
    Other atoms: Cl (1);
  39. 6w3p (Na: 2) - Crystal Structure of Ligand-Binding Domain of Campylobacter Jejuni Chemoreceptor TLP3 in Complex with Beta-Methylnorleucine
    Other atoms: Cl (5);
  40. 6w3q (Na: 1) - APE1 Exonuclease Substrate Complex L104R
    Other atoms: Ca (1);
Page generated: Thu Dec 17 13:13:28 2020

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