Sodium in PDB 6vb2: Hla-B*15:02 Complexed with A Synthetic Peptide

The structure of Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb2 was solved by R.J.Schutte, D.Li, D.A.Ostrov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.16 / 1.41
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.849, 81.407, 110.065, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 23.2

The binding sites of Sodium atom in the Hla-B*15:02 Complexed with A Synthetic Peptide (pdb code 6vb2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb2:

Sodium binding site 1 out of 1 in the Hla-B*15:02 Complexed with A Synthetic Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hla-B*15:02 Complexed with A Synthetic Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:41.9 occ:1.00 O A:HOH623 2.5 32.7 1.0 O A:HOH647 2.7 35.6 1.0 OE2 A:GLU264 2.8 33.5 1.0 O A:HOH662 2.9 29.9 1.0 O A:HOH526 3.7 29.0 1.0 CD A:GLU264 3.8 34.3 1.0 C A:GLN180 3.9 15.2 1.0 O A:GLN180 4.0 17.6 1.0 CA A:GLN180 4.0 15.7 1.0 OE1 A:GLU264 4.2 31.0 1.0 CE1 A:HIS3 4.2 16.5 1.0 O A:LEU179 4.2 15.3 1.0 N A:ARG181 4.3 12.7 1.0 N A:GLY1 4.4 38.5 1.0 N A:ALA182 4.5 12.9 1.0 O A:HOH681 4.5 27.1 1.0 CB A:ALA182 4.6 13.3 1.0 C A:ARG181 4.7 13.7 1.0 NE2 A:HIS3 4.7 18.9 1.0 O A:HOH597 4.7 17.2 1.0 O A:HOH574 4.8 30.9 1.0 CA A:ARG181 4.9 12.5 1.0 CB A:GLN180 4.9 16.5 1.0

R.J.Schutte, D.Li, D.A.Ostrov. Hla-B*15:02 Complexed with A Synthetic Peptide To Be Published.