Sodium in PDB 6vb7: Hla-B*15:02 Complexed with A Synthetic Peptide

The structure of Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb7 was solved by R.J.Schutte, D.Li, D.A.Ostrov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.80 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.906, 81.522, 110.150, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 25.7

The binding sites of Sodium atom in the Hla-B*15:02 Complexed with A Synthetic Peptide (pdb code 6vb7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hla-B*15:02 Complexed with A Synthetic Peptide, PDB code: 6vb7:

Sodium binding site 1 out of 1 in the Hla-B*15:02 Complexed with A Synthetic Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hla-B*15:02 Complexed with A Synthetic Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:42.2 occ:1.00 O B:LEU87 2.4 41.2 1.0 O B:HOH201 2.4 34.1 1.0 O B:HOH250 2.6 41.0 1.0 ND2 B:ASN83 2.6 41.7 1.0 O B:HIS84 2.7 40.6 1.0 CG B:ASN83 3.4 46.9 1.0 OD1 B:ASN83 3.4 63.0 1.0 C B:LEU87 3.6 44.1 1.0 C B:HIS84 3.6 38.2 1.0 O B:HOH211 3.9 55.2 1.0 CA B:VAL85 4.2 38.9 1.0 N B:HIS84 4.2 36.9 1.0 N B:LEU87 4.2 38.3 1.0 CA B:LEU87 4.3 42.3 1.0 N B:VAL85 4.3 35.4 1.0 O B:VAL85 4.3 43.7 1.0 C B:VAL85 4.3 36.9 1.0 CB B:LEU87 4.4 30.6 1.0 O B:SER88 4.5 46.9 1.0 C B:SER88 4.5 50.3 1.0 CA B:HIS84 4.6 36.9 1.0 N B:SER88 4.6 47.2 1.0 CB B:ASN83 4.8 38.3 1.0 CA B:SER88 4.8 46.3 1.0 N B:GLN89 4.9 44.4 1.0

R.J.Schutte, D.Li, D.A.Ostrov. Hla-B*15:02 Complexed with A Synthetic Peptide To Be Published.