Sodium in PDB 6v1a: Immune Receptor Complex

Protein crystallography data

The structure of Immune Receptor Complex, PDB code: 6v1a was solved by J.J.Lim, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.72 / 2.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 149.344, 56.990, 131.184, 90.00, 90.87, 90.00
R / Rfree (%) 18.7 / 21.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Immune Receptor Complex (pdb code 6v1a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Immune Receptor Complex, PDB code: 6v1a:

Sodium binding site 1 out of 1 in 6v1a

Go back to Sodium Binding Sites List in 6v1a
Sodium binding site 1 out of 1 in the Immune Receptor Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Immune Receptor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na301

b:30.0
occ:1.00
O D:GLY78 3.1 43.6 1.0
N D:ALA92 3.3 41.3 1.0
CB D:ALA92 3.8 36.7 1.0
CA D:LYS91 3.9 39.3 1.0
C D:LYS91 4.1 43.0 1.0
CA D:ALA92 4.2 41.6 1.0
C D:GLY78 4.2 39.7 1.0
CG D:LYS91 4.7 38.4 1.0
O D:GLN90 4.7 39.6 1.0
OE1 D:GLU80 4.7 72.8 1.0
N D:LYS91 4.8 39.4 1.0
CB D:LYS91 4.8 36.6 1.0
CA D:GLY78 4.9 40.6 1.0

Reference:

J.J.Lim, J.Rossjohn. Immune Receptor Complex To Be Published.
Page generated: Tue Dec 15 14:40:39 2020

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