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Sodium in PDB, part 175 (files: 6961-7000), PDB 5txq-5u4u

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 6961-7000 (PDB 5txq-5u4u).
  1. 5txq (Na: 2) - Crystal Structure of the A143D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2);
  2. 5txu (Na: 2) - 1.95 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Apo Conformation
    Other atoms: Cl (2); Zn (1);
  3. 5txx (Na: 1) - Dna Polymerase Mu Pre-Catalytic Ground State Ternary Complex, CA2+
    Other atoms: Ca (2);
  4. 5txz (Na: 1) - Dna Polymerase Mu Reactant Complex, 100MM MG2+ (15 Min)
    Other atoms: Mg (2); Ca (1);
  5. 5ty0 (Na: 1) - 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila.
  6. 5ty1 (Na: 1) - Identification of A New Zinc Binding Chemotype By Fragment Screening
    Other atoms: Zn (1);
  7. 5ty2 (Na: 1) - Crystal Structure of S. Aureus Penicillin Binding Protein 4 (PBP4) Mutant (E183A, F241R) in Complex with Nafcillin
    Other atoms: Cl (2); Zn (4);
  8. 5ty7 (Na: 2) - Crystal Structure of Wild-Type S. Aureus Penicillin Binding Protein 4 (PBP4) in Complex with Nafcillin
    Other atoms: Zn (4);
  9. 5tyb (Na: 1) - Dna Polymerase Mu Reactant Complex, 10MM MG2+ (7.5 Min)
    Other atoms: Mg (1); Ca (1);
  10. 5tyc (Na: 1) - Dna Polymerase Mu Reactant Complex, 10MM MG2+ (15 Min)
    Other atoms: Mg (2); Ca (1);
  11. 5tyd (Na: 1) - Dna Polymerase Mu Reactant Complex, 10 Mm MG2+ (45 Min)
    Other atoms: Mg (2);
  12. 5tye (Na: 2) - Dna Polymerase Mu Product Complex, 10 Mm MG2+ (60 Min)
    Other atoms: Mg (2);
  13. 5tyf (Na: 2) - Dna Polymerase Mu Product Complex, 10 Mm MG2+ (270 Min)
    Other atoms: Mg (1);
  14. 5tyg (Na: 2) - Dna Polymerase Mu Product Complex, 10 Mm MG2+ (960 Min)
    Other atoms: Mg (1);
  15. 5tyu (Na: 1) - Dna Polymerase Mu Reactant Complex, MN2+ (4 Min)
    Other atoms: Mn (4); Ca (1);
  16. 5tyv (Na: 1) - Dna Polymerase Mu Reactant Complex, MN2+ (7.5 Min)
    Other atoms: Mn (7);
  17. 5tyw (Na: 1) - Dna Polymerase Mu Reactant Complex, MN2+ (10 Min)
    Other atoms: Mn (6);
  18. 5tyx (Na: 1) - Dna Polymerase Mu Product Complex, MN2+ (15 Min)
    Other atoms: Mn (7);
  19. 5tyy (Na: 1) - Dna Polymerase Mu Product Complex, MN2+ (60 Min)
    Other atoms: Mn (7);
  20. 5tyz (Na: 1) - Dna Polymerase Mu Product Complex, MN2+ (960 Min)
    Other atoms: Mn (6);
  21. 5tzr (Na: 1) - GPR40 in Complex with Partial Agonist Mk-8666
  22. 5tzv (Na: 4) - Binary Complex Crystal Structure of Dna Polymerase Beta with G:T Mismatch at the Primer Terminus
  23. 5u0i (Na: 3) - C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form
    Other atoms: Cl (1);
  24. 5u0j (Na: 6) - C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Monoclinic Crystal Form
  25. 5u0v (Na: 2) - E. Coli Dihydropteroate Synthase Complexed with 6-Methylamino-5- Nitrosoisocytosine
  26. 5u16 (Na: 3) - Structure of Human MR1-2-Oh-1-Na in Complex with Human Mait A-F7 Tcr
    Other atoms: Cl (3);
  27. 5u17 (Na: 3) - Structure of Human MR1-Da-6-Fp in Complex with Human Mait A-F7 Tcr
  28. 5u1a (Na: 30) - Ferritin with Gc Mtre Loop 1 Inserted at HIS34
    Other atoms: Fe (6); Cl (8);
  29. 5u1r (Na: 2) - Structure of Human MR1-Diclofenac in Complex with Human Mait A-F7 Tcr
    Other atoms: Cl (4);
  30. 5u1z (Na: 2) - X-Ray Structure of the Wlarg Aminotransferase, Apo Form, From Campylobacter Jejune
    Other atoms: Cl (3);
  31. 5u20 (Na: 2) - X-Ray Structure of the Wlarg Aminotransferase From Campylobacter Jejuni, Internal Plp-Aldimine
    Other atoms: Cl (1);
  32. 5u21 (Na: 2) - X-Ray Structure of the Wlarf Aminotransferase From Campylobacter Jejuni, K184A Mutant in Complex with Tdp-QUI3N
    Other atoms: Cl (1);
  33. 5u23 (Na: 2) - X-Ray Structure of the Wlarg Aminotransferase From Campylobacter Jejuni in Complex with Tdp-QUI3N
    Other atoms: Cl (1);
  34. 5u24 (Na: 2) - X-Ray Structure of the Wlarg Aminotransferase From Campylobacter Jejuni, K184A Mutant in Complex with Tdp-FUC3N
    Other atoms: Cl (1);
  35. 5u2r (Na: 2) - Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
    Other atoms: Ca (2);
  36. 5u2s (Na: 4) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate Incoming (-)3TC-Tp and CA2+.
    Other atoms: Ca (1);
  37. 5u2t (Na: 5) - Pre-Catalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate Incoming (-)Ftc-Tp and CA2+.
    Other atoms: F (1); Ca (1);
  38. 5u35 (Na: 1) - Crystal Structure of A De Novo Designed Protein with Curved Beta-Sheet
    Other atoms: Cl (2);
  39. 5u4h (Na: 12) - 1.05 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Acinetobacter Baumannii in Covalently Bound Complex with (2R)-2-(Phosphonooxy)Propanoic Acid.
  40. 5u4u (Na: 3) - Pseudogtpase Domain (PG1) of P190RHOGAP-A
Page generated: Fri Dec 24 09:50:40 2021

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