Sodium »
PDB 5txu-5u63 »
5u2r »
Sodium in PDB 5u2r: Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
Enzymatic activity of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
All present enzymatic activity of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+, PDB code: 5u2r
was solved by
R.Vyas,
Z.Suo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 26.96 / 1.80 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.910, 80.160, 55.640, 90.00, 107.68, 90.00 |
| R / Rfree (%) | 19.1 / 22.9 |
Other elements in 5u2r:
The structure of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+ also contains other interesting chemical elements:
| Calcium | (Ca) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
(pdb code 5u2r). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+, PDB code: 5u2r:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+, PDB code: 5u2r:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 5u2r
Go back to
Sodium Binding Sites List in 5u2r
Sodium binding site 1 out
of 2 in the Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+ within 5.0Å range:
|
Sodium binding site 2 out of 2 in 5u2r
Go back to
Sodium Binding Sites List in 5u2r
Sodium binding site 2 out
of 2 in the Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substarte, Incoming L-Dctp and CA2+ within 5.0Å range:
|
Reference:
R.Vyas,
A.J.Reed,
A.T.Raper,
W.J.Zahurancik,
P.C.Wallenmeyer,
Z.Suo.
Structural Basis For the D-Stereoselectivity of Human Dna Polymerase Beta. Nucleic Acids Res. V. 45 6228 2017.
ISSN: ESSN 1362-4962
PubMed: 28402499
DOI: 10.1093/NAR/GKX252
Page generated: Tue Oct 8 00:22:01 2024
ISSN: ESSN 1362-4962
PubMed: 28402499
DOI: 10.1093/NAR/GKX252
Last articles
Fe in 2YXOFe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
