Sodium in PDB 5u0i: C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form

Enzymatic activity of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form

All present enzymatic activity of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form:
3.5.1.2;

Protein crystallography data

The structure of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form, PDB code: 5u0i was solved by C.C.Pasquali, A.Gonzalez, S.M.G.Dias, A.L.B.Ambrosio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	38.09 / 1.42
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	75.290, 75.290, 88.310, 90.00, 90.00, 90.00
*R / R_free (%)*	14.4 / 18

Other elements in 5u0i:

The structure of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form (pdb code 5u0i). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form, PDB code: 5u0i:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in 5u0i

Go back to

Sodium Binding Sites List in 5u0i

Sodium binding site 1 out of 3 in the C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na701 b:33.2 occ:1.00	O	B:HOH929	2.4	40.1	1.0
	OG	B:SER586	2.9	16.1	1.0
	O	B:HOH911	3.3	42.6	1.0
	O	B:TYR584	3.4	15.1	1.0
	C	B:ASP585	3.5	10.9	1.0
	CB	B:ARG618	3.6	15.9	1.0
	N	B:SER586	3.6	10.5	1.0
	CB	B:SER586	3.6	13.1	1.0
	CA	B:ASP585	3.8	10.7	1.0
	CZ	B:ARG618	3.8	17.2	1.0
	O	A:HOH811	3.8	34.4	1.0
	NH2	B:ARG618	3.9	18.6	1.0
	CA	B:ARG618	3.9	13.3	1.0
	NE	B:ARG618	4.0	16.9	1.0
	O	B:ASP585	4.0	11.9	1.0
	CG	B:ARG618	4.0	19.3	1.0
	C	B:TYR584	4.1	12.5	1.0
	CA	B:SER586	4.2	11.2	1.0
	NH1	B:ARG618	4.2	18.6	1.0
	N	B:ASP585	4.3	11.3	1.0
	O	B:HOH845	4.3	41.0	1.0
	N	B:ARG618	4.4	12.2	1.0
	CD	B:ARG618	4.6	19.0	1.0
	O	B:HOH819	4.7	34.6	1.0
	CE1	A:TYR562	4.9	20.1	1.0
	O	A:HOH802	4.9	36.9	1.0

Sodium binding site 2 out of 3 in 5u0i

Go back to

Sodium Binding Sites List in 5u0i

Sodium binding site 2 out of 3 in the C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na702 b:31.9 occ:1.00	O	B:HOH909	2.4	39.4	1.0
	OG1	B:THR563	2.7	15.2	1.0
	CB	B:THR563	3.4	13.3	1.0
	CG2	B:THR563	3.7	15.2	1.0
	OD2	B:ASP565	3.8	16.3	1.0
	CB	B:ASP565	4.1	14.0	1.0
	O	B:HOH850	4.3	44.0	1.0
	CG	B:ASP565	4.4	14.3	1.0
	O	B:HOH895	4.6	44.5	1.0
	O	B:PHE559	4.9	11.7	1.0
	CA	B:THR563	4.9	11.7	1.0

Sodium binding site 3 out of 3 in 5u0i

Go back to

Sodium Binding Sites List in 5u0i

Sodium binding site 3 out of 3 in the C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of C-Terminal Ankyrin Repeats From Human Kidney-Type Glutaminase (Kga) - Tetragonal Crystal Form within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na703 b:20.0 occ:1.00	O	B:HOH835	2.9	35.3	1.0
	O	B:HOH969	3.0	42.8	1.0
	CD2	B:PHE614	4.1	39.6	1.0
	O	B:HOH897	4.3	22.6	1.0
	CG2	B:THR622	4.4	12.5	1.0
	CE2	B:PHE614	4.4	40.0	1.0
	O	B:HOH875	4.6	16.9	1.0
	O	B:HOH906	4.8	36.9	1.0

Reference:

C.C.Pasquali, Z.Islam, D.Adamoski, I.M.Ferreira, R.D.Righeto, J.Bettini, R.V.Portugal, W.W.Yue, A.Gonzalez, S.M.G.Dias, A.L.B.Ambrosio. The Origin and Evolution of Human Glutaminases and Their Atypical C-Terminal Ankyrin Repeats. J. Biol. Chem. V. 292 11572 2017.
ISSN: ESSN 1083-351X
PubMed: 28526749
DOI: 10.1074/JBC.M117.787291

Page generated: Tue Dec 15 11:40:09 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy