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Sodium in PDB 5ty0: 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila.

Protein crystallography data

The structure of 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila., PDB code: 5ty0 was solved by G.Minasov, Z.Wawrzak, L.Shuvalova, A.Cardona-Correa, I.Dubrovska, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.87 / 2.22
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.399, 89.853, 117.980, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.5

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila. (pdb code 5ty0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila., PDB code: 5ty0:

Sodium binding site 1 out of 1 in 5ty0

Go back to Sodium Binding Sites List in 5ty0
Sodium binding site 1 out of 1 in the 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1- 419) of Elongation Factor G From Legionella Pneumophila. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:41.7
occ:1.00
O A:HOH648 2.5 31.2 1.0
O A:HOH790 2.6 44.0 1.0
O A:LEU101 2.7 32.9 1.0
O A:LEU104 2.8 34.8 1.0
O A:HOH651 2.8 31.2 1.0
C A:LEU101 3.8 32.4 1.0
CA A:ARG102 3.9 35.1 1.0
C A:LEU104 3.9 31.1 1.0
O A:ARG102 4.0 34.7 1.0
CA A:ASP105 4.1 29.3 1.0
C A:ARG102 4.1 34.2 1.0
CG2 A:VAL133 4.1 31.4 1.0
N A:ARG102 4.3 32.7 1.0
CD1 A:ILE290 4.4 37.1 1.0
O A:ASP105 4.4 28.7 1.0
N A:ASP105 4.5 29.4 1.0
CD1 A:LEU104 4.6 33.4 1.0
OD1 A:ASP105 4.6 35.5 1.0
C A:ASP105 4.6 28.2 1.0
O A:HOH807 4.7 32.2 1.0

Reference:

G.Minasov, Z.Wawrzak, L.Shuvalova, A.Cardona-Correa, I.Dubrovska, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.22 Angstrom Crystal Structure of N-Terminal Fragment (Residues 1-419) of Elongation Factor G From Legionella Pneumophila. To Be Published.
Page generated: Tue Dec 15 11:39:04 2020

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