Sodium in PDB, part 172 (files: 6841-6880),
PDB 5rdn-5syl
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 6841-6880 (PDB 5rdn-5syl).
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5rdn (Na: 1) - Pandda Analysis Group Deposition -- Endothiapepsin Ground State Model 47
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5re3 (Na: 1) - Pandda Analysis Group Deposition -- Endothiapepsin Ground State Model 12
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5s9l (Na: 1) - Autotaxin, 4-[3-Oxo-3-(2-Oxo-2,3-Dihydro-Benzooxazol-6-Yl)-Propyl]- Piperazine-1-Carboxylic Acid 3,5-Dichloro-Benzyl Ester, 1.90A, P212121, Rfree=19.1%
Other atoms:
Cl (2);
Zn (1);
Ca (2);
K (1);
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5s9m (Na: 1) - Autotaxin, (3,5-Dichlorophenyl)Methyl (3AS,8AR)-2-(1H-Benzotriazole-5- Carbonyl)-1,3,3A,4,5,7,8,8A-Octahydropyrrolo[3,4-D]Azepine-6- Carboxylate, 1.80A, P212121, Rfree=21.1%
Other atoms:
Zn (2);
Cl (3);
Ca (3);
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5s9n (Na: 1) - Autotaxin, [4-(Trifluoromethoxy)Phenyl]Methyl (3AS,6AS)-2-(1H- Benzotriazole-5-Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4- C]Pyrrole-5-Carboxylate, 1.80A, P212121, Rfree=23.3%
Other atoms:
Cl (4);
Zn (1);
Ca (2);
F (3);
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5scx (Na: 1) - Crystal Structure of Dihydrofolate Reductase From Mycobacterium Tuberculosis Bound to Nadp and Sddc Inhibitor Sddc-1190 (Racemic Mixture)
Other atoms:
F (2);
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5scz (Na: 1) - Crystal Structure of Dihydrofolate Reductase From Mycobacterium Tuberculosis Bound to Nadp and Sddc Inhibitor Sddc-1224
Other atoms:
Cl (1);
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5sur (Na: 2) - X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V.
Other atoms:
Cl (2);
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5sus (Na: 1) - X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. X-Ray Diffractometer Data Set. (Orn)Cvf(Mea)Ced(Orn) Aiigl(Orn)V.
Other atoms:
Cl (1);
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5sv5 (Na: 3) - 1.0 Angstrom Crystal Structure of Pre-Peptidase C-Terminal Domain of Collagenase From Bacillus Anthracis.
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5svj (Na: 1) - Crystal Structure of the Atp-Gated Human P2X3 Ion Channel in the Closed, Apo State
Other atoms:
Mg (1);
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5svl (Na: 3) - Crystal Structure of the Atp-Gated Human P2X3 Ion Channel in the Atp- Bound, Closed (Desensitized) State
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5svm (Na: 2) - Crystal Structure of the Atp-Gated Human P2X3 Ion Channel Bound to Agonist 2-Methylthio-Atp in the Desensitized State
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5svp (Na: 2) - Anomalous Sulfur Signal Reveals the Position of Agonist 2-Methylthio- Atp Bound to the Atp-Gated Human P2X3 Ion Channel in the Desensitized State
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5svq (Na: 1) - Crystal Structure of the Atp-Gated Human P2X3 Ion Channel Bound to Competitive Antagonist Tnp-Atp
Other atoms:
Mg (1);
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5svr (Na: 1) - Crystal Structure of the Atp-Gated Human P2X3 Ion Channel Bound to Competitive Antagonist A-317491
Other atoms:
Mg (1);
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5svs (Na: 1) - Anomalous MN2+ Signal Reveals A Divalent Cation-Binding Site in the Head Domain of the Atp-Gated Human P2X3 Ion Channel
Other atoms:
Mg (1);
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5svt (Na: 1) - Anomalous Cs+ Signal Reveals the Site of Na+ Ion Entry to the Channel Pore of the Human P2X3 Ion Channel Through the Extracellular Fenestrations
Other atoms:
Mg (1);
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5sw4 (Na: 2) - Crystal Structure of Native Catalase-Peroxidase Katg at PH8.0
Other atoms:
Fe (2);
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5sw5 (Na: 2) - Crystal Structure of Native Catalase-Peroxidase Katg at PH7.5
Other atoms:
Fe (2);
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5sw6 (Na: 2) - Crystal Structure of An Oxoferryl Species of Catalase-Peroxidase Katg at PH5.6
Other atoms:
Fe (2);
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5swm (Na: 1) - Bacillus Halodurans Rnase H Mutant D132N in Complex with 12-Mer Frna/Dna Hybrid
Other atoms:
F (36);
Br (3);
Cl (1);
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5swz (Na: 6) - Crystal Structure of NP1-B17 Tcr-H2DB-Np Complex
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5sx0 (Na: 2) - Crystal Structure of An Oxoferryl Species of Catalase-Peroxidase Katg at PH7.5
Other atoms:
Fe (2);
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5sx1 (Na: 2) - Crystal Structure of D141E Variant of B. Pseudomallei Katg
Other atoms:
Fe (2);
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5sx2 (Na: 2) - Crystal Structure of the D141E Mutant of B. Pseudomallei Katg at pH 8.0.
Other atoms:
Fe (2);
-
5sx3 (Na: 2) - Crystal Structure of the Catalase-Peroxidase Katg of B. Pseudomaallei at pH 4.5
Other atoms:
Fe (2);
Cl (2);
-
5sx6 (Na: 2) - Crystal Structure of the Catalase-Peroxidase Katg of B. Pseudomallei at pH 6.5
Other atoms:
Fe (2);
-
5sx7 (Na: 2) - Crystal Structure of Catalase-Peroxidase Katg of B. Pseudomallei at pH 8.5
Other atoms:
Fe (2);
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5sxq (Na: 2) - Crystal Structure of B. Pseudomallei Katg with Isonicotinic Acid Hydrazide Bound
Other atoms:
Fe (2);
Cl (2);
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5sxr (Na: 2) - Crystal Structure of B. Pseudomallei Katg with Nad Bound
Other atoms:
Fe (2);
Cl (2);
-
5sxs (Na: 2) - Crystal Structure of Catalase-Peroxidase Katg with Isonicotinic Acid Hydrazide and Amp Bound
Other atoms:
Fe (2);
Cl (2);
-
5sxt (Na: 2) - Crystal Structure of the S324T Variant of Burkholderia Pseudomallei Katg with Isonicotinic Acid Hydrazide Bound
Other atoms:
Fe (2);
Cl (2);
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5sxw (Na: 2) - Crystal Structure of the E198A Variant of Catalase-Peroxidase Katg of Burkholderia Pseudomallei
Other atoms:
Fe (2);
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5sxx (Na: 2) - Crystal Structure of the E198A Variant of Burkholderia Pseudomallei Catalase-Peroxidase Katg with Inh
Other atoms:
Fe (2);
Cl (2);
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5syh (Na: 2) - Structure of D141A Variant of B. Pseudomallei Katg
Other atoms:
Fe (2);
Cl (2);
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5syi (Na: 2) - Structure of D141A Variant of B. Pseudomallei Katg Complexed with Inh
Other atoms:
Fe (2);
Cl (2);
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5syj (Na: 2) - Crystal Structure of the D141A Variant of B. Pseudomallei Katgin Complex with Isoniazid
Other atoms:
Fe (2);
Cl (2);
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5syk (Na: 2) - Crystal Structure of B. Pseudomallei Katg Treated with Hydrogen Peroxide
Other atoms:
Fe (2);
Cl (2);
-
5syl (Na: 2) - B. Pseudomallei Katg with Kcn Bound
Other atoms:
Fe (2);
Cl (2);
Page generated: Wed Nov 13 13:03:47 2024
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