Sodium in PDB 5syl: B. Pseudomallei Katg with Kcn Bound

All present enzymatic activity of B. Pseudomallei Katg with Kcn Bound:
1.11.1.21;

The structure of B. Pseudomallei Katg with Kcn Bound, PDB code: 5syl was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	101.114, 114.231, 175.190, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21.6

The structure of B. Pseudomallei Katg with Kcn Bound also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the B. Pseudomallei Katg with Kcn Bound (pdb code 5syl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the B. Pseudomallei Katg with Kcn Bound, PDB code: 5syl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the B. Pseudomallei Katg with Kcn Bound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of B. Pseudomallei Katg with Kcn Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Na801 b:12.7 occ:1.00 O A:HOH1151 2.3 17.3 1.0 O A:GLY124 2.3 11.7 1.0 O A:SER494 2.3 12.6 1.0 O A:GLY122 2.3 12.9 1.0 O A:HOH1473 2.4 14.9 1.0 C A:SER494 3.2 12.7 1.0 C A:GLY124 3.4 11.5 1.0 C A:GLY122 3.5 13.1 1.0 C A:ARG123 3.6 13.0 1.0 CA A:ARG123 3.6 13.0 1.0 N A:GLY124 3.6 12.4 1.0 CA A:SER494 3.9 12.4 1.0 O A:HOH1172 4.0 17.4 1.0 N A:ARG123 4.0 13.0 1.0 OD2 A:ASP427 4.0 12.6 1.0 N A:ASP495 4.1 12.6 1.0 CA A:GLY124 4.1 11.9 1.0 O A:HOH1531 4.1 13.8 1.0 O A:ARG123 4.1 13.2 1.0 CB A:SER494 4.2 12.7 1.0 CB A:ASP427 4.2 15.0 1.0 CA A:ASP495 4.4 11.8 1.0 N A:GLY125 4.6 11.6 1.0 CB A:ASP495 4.6 12.2 1.0 CL A:CL802 4.6 29.8 1.0 CG A:ASP427 4.7 14.8 1.0 CA A:GLY122 4.7 13.7 1.0 CD1 A:TYR117 4.7 15.7 1.0 CB A:ARG123 4.9 13.4 1.0 CA A:GLY125 4.9 11.7 1.0 O A:HOH1410 5.0 30.8 1.0

Sodium binding site 2 out of 2 in the B. Pseudomallei Katg with Kcn Bound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of B. Pseudomallei Katg with Kcn Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Na802 b:13.3 occ:1.00 O B:SER494 2.3 12.4 1.0 O B:GLY122 2.3 11.4 1.0 O B:GLY124 2.3 13.2 1.0 O B:HOH996 2.4 16.6 1.0 O B:HOH1450 2.4 20.7 1.0 C B:SER494 3.2 12.3 1.0 C B:GLY122 3.4 11.3 1.0 C B:GLY124 3.5 12.3 1.0 N B:GLY124 3.6 13.0 1.0 C B:ARG123 3.6 12.3 1.0 CA B:ARG123 3.6 11.7 1.0 OD2 B:ASP427 3.9 12.8 1.0 O B:HOH1493 3.9 15.5 1.0 CA B:SER494 3.9 12.1 1.0 O B:HOH1017 4.0 28.3 1.0 N B:ARG123 4.0 12.1 1.0 N B:ASP495 4.0 12.1 1.0 CB B:ASP427 4.1 13.9 1.0 CA B:GLY124 4.1 13.0 1.0 O B:ARG123 4.1 11.1 1.0 CB B:SER494 4.2 11.9 1.0 CA B:ASP495 4.3 12.7 1.0 CB B:ASP495 4.5 12.7 1.0 CG B:ASP427 4.5 13.6 1.0 N B:GLY125 4.6 12.6 1.0 CD1 B:TYR117 4.6 11.6 1.0 CA B:GLY122 4.7 12.1 1.0 CL B:CL803 4.8 31.8 1.0 CA B:GLY125 4.9 12.2 1.0 CE1 B:TYR117 4.9 11.9 1.0 CB B:ARG123 4.9 12.1 1.0

P.C.Loewen, P.C.Loewen. N/A N/A.