Sodium in PDB 5sur: X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V.

The structure of X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V., PDB code: 5sur was solved by A.G.Kreutzer, S.Yoo, J.S.Nowick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.45 / 1.80
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	57.401, 57.401, 94.140, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 24.9

The structure of X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V. also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V. (pdb code 5sur). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V., PDB code: 5sur:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:71.8 occ:1.00 HB2 A:ASP8 3.5 0.9 1.0 HD11 A:LEU14 3.7 54.2 1.0 HB2 A:CYS6 3.8 47.6 1.0 HB3 A:CYS6 3.9 47.6 1.0 HD3 B:ORN1 3.9 61.7 1.0 O B:HOH102 4.1 90.4 1.0 OD2 A:ASP8 4.2 0.8 1.0 HG12 B:VAL16 4.2 66.6 1.0 HG13 B:VAL16 4.3 66.6 1.0 CB A:CYS6 4.3 39.6 1.0 O B:HOH106 4.3 64.3 1.0 HD2 B:ORN1 4.3 61.7 1.0 CB A:ASP8 4.4 99.1 1.0 CD1 A:LEU14 4.4 45.1 1.0 CD B:ORN1 4.4 51.4 1.0 HD13 A:LEU14 4.5 54.2 1.0 NE B:ORN1 4.6 59.2 1.0 CG1 B:VAL16 4.7 55.5 1.0 HD12 A:LEU14 4.7 54.2 1.0 CG A:ASP8 4.7 0.1 1.0 HE1 B:ORN1 4.8 71.1 1.0 O A:GLU7 4.8 54.8 1.0 HB3 A:ASP8 4.9 0.9 1.0 C A:GLU7 5.0 61.8 1.0 C B:VAL16 5.0 53.9 1.0

Sodium binding site 2 out of 2 in the X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Crystallographic Structure of A Covalent Trimer Derived From A- Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na102 b:56.5 occ:1.00 O D:HOH206 2.4 98.8 1.0 HD2 D:ORN15 3.0 79.4 1.0 HN3 D:ORN15 3.3 67.7 1.0 HB3 D:ORN1 3.6 63.0 1.0 HE2 D:ORN15 3.6 67.7 1.0 NE D:ORN15 3.7 56.4 1.0 CD D:ORN15 3.8 66.2 1.0 H2 D:ORN1 4.2 72.4 1.0 HG2 D:ORN1 4.3 65.3 1.0 HG2 D:ORN15 4.3 76.4 1.0 HD3 D:ORN15 4.5 79.4 1.0 CB D:ORN1 4.6 52.5 1.0 CG D:ORN15 4.6 63.7 1.0 HE1 D:ORN15 4.6 67.7 1.0 HG3 D:ORN1 4.8 65.3 1.0 CG D:ORN1 4.8 54.4 1.0 HG3 D:ORN15 4.9 76.4 1.0

A.G.Kreutzer, S.Yoo, R.K.Spencer, J.S.Nowick. X-Ray Crystallographic Structure of A Covalent Trimer Derived From A-Beta 17_36. Synchrotron Data Set. (Orn)Cvf(Mea)Ced(Orn)Aiigl(Orn)V. To Be Published.