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Sodium in PDB, part 153 (files: 6081-6120), PDB 5kd8-5kw9

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 6081-6120 (PDB 5kd8-5kw9).
  1. 5kd8 (Na: 2) - BT_4244 Metallopeptidase in Complex with Tn Antigen.
    Other atoms: Ni (2); Zn (1);
  2. 5kdj (Na: 1) - Zmpb Metallopeptidase From Clostridium Perfringens
    Other atoms: Zn (2);
  3. 5kdp (Na: 2) - E491A Mutant of Choline Tma-Lyase
  4. 5kh9 (Na: 1) - Crystal Structure of A Low Occupancy Fragment Candidate (5-[(4- Isopropylphenyl)Amino]-6-Methyl-1,2,4-Triazin-3(2H)-One) Bound in the Ubiquitin Binding Pocket of the HDAC6 Zinc-Finger Domain
    Other atoms: Zn (3);
  5. 5kim (Na: 2) - Pseudo T4 Lysozyme Mutant - Y88PHE-I
    Other atoms: I (1);
  6. 5kis (Na: 2) - Yenb/RHS2 Complex
    Other atoms: Cl (4); Ca (2);
  7. 5kj2 (Na: 1) - The Novel P300/Cbp Inhibitor A-485 Uncovers A Unique Mechanism of Action to Target Ar in Castrate Resistant Prostate Cancer
    Other atoms: F (4);
  8. 5kj9 (Na: 1) - Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand
    Other atoms: Ru (1);
  9. 5kjn (Na: 2) - SMYD2 in Complex with AZ506
    Other atoms: Zn (3);
  10. 5kki (Na: 1) - 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K
    Other atoms: Cl (5);
  11. 5kkj (Na: 1) - 2.0-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 293 K
    Other atoms: Cl (2);
  12. 5kl2 (Na: 1) - Wilms Tumor Protein (WT1) ZNF2-4 in Complex with Dna
    Other atoms: Zn (3);
  13. 5kl4 (Na: 1) - Wilms Tumor Protein (WT1) ZNF2-4 Q369H in Complex with Formylated Dna
    Other atoms: Zn (6); Ca (2);
  14. 5klk (Na: 3) - Crystal Structure of 2-Aminomuconate 6-Semialdehyde Dehydrogenase N169D in Complex with Nad+ and 2-Hydroxymuconate-6-Semialdehyde
  15. 5kll (Na: 4) - Crystal Structure of 2-Hydroxymuconate-6-Semialdehyde Derived Tautomeric Intermediate in 2-Aminomuconate 6-Semialdehyde Dehydrogenase N169D
  16. 5klm (Na: 4) - Crystal Structure of 2-Hydroxymuconate-6-Semialdehyde Derived Intermediate in Nad(+)-Bound 2-Aminomuconate 6-Semialdehyde Dehydrogenase N169D
  17. 5kln (Na: 4) - Crystal Structure of 2-Aminomuconate 6-Semialdehyde Dehydrogenase N169A in Complex with Nad+
  18. 5klo (Na: 4) - Crystal Structure of Thioacyl Intermediate in 2-Aminomuconate 6- Semialdehyde Dehydrogenase N169A
  19. 5kn7 (Na: 3) - Lipid A Secondary Acyltransferase Lpxm From Acinetobacter Baumannii
  20. 5kom (Na: 1) - The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant
    Other atoms: F (2);
  21. 5kq0 (Na: 2) - Crystal Structure of the A290D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  22. 5kq2 (Na: 2) - Crystal Structure of the A357D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  23. 5kq3 (Na: 2) - Crystal Structure of the D141A/Q233E Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  24. 5kq6 (Na: 2) - Crystal Structure of the A359D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  25. 5kqh (Na: 2) - Crystal Structure of the V293D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (1);
  26. 5kqi (Na: 2) - Crystal Structure of the L326D Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  27. 5kqk (Na: 2) - Crystal Structure of the Q233E/N240D Variant of the Catalase- Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  28. 5kqn (Na: 2) - Crystal Structure of the H381S Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2);
  29. 5kqq (Na: 2) - Crystal Structure of the W153F Variant of Catalase-Peroxidase From B. Pseudomallei Treated
    Other atoms: Fe (2);
  30. 5ksf (Na: 2) - Crystal Structure of the D141A Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Acetate
    Other atoms: Fe (2); Cl (2);
  31. 5ksg (Na: 2) - Crystal Structure of the W153F Variant of Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid
    Other atoms: Fe (2); Cl (2);
  32. 5ksk (Na: 2) - Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Acetate
    Other atoms: Fe (2); Cl (2);
  33. 5ksn (Na: 2) - Crystal Structure of the S324G Variant of Catalase-Peroxidase From B. Pseudomallei with Inh Bound
    Other atoms: Fe (2); Cl (2);
  34. 5kt8 (Na: 2) - Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid
    Other atoms: Fe (2); Cl (2);
  35. 5kt9 (Na: 2) - Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide
    Other atoms: Fe (2); Cl (2);
  36. 5ku9 (Na: 1) - Crystal Structure of MCL1 with Compound 1
    Other atoms: Br (2); Cl (4);
  37. 5kvc (Na: 2) - Thermostable Mutant of Halohydrin Dehalogenase (Hhec)
    Other atoms: Cl (5);
  38. 5kvd (Na: 2) - Zika Specific Antibody, Zv-2, Bound to Zika Envelope Diii
  39. 5kve (Na: 2) - Zika Specific Antibody, Zv-48, Bound to Zika Envelope Diii
  40. 5kw9 (Na: 3) - Structural Basis For Norovirus Neutralization By A Hbga Blocking Human Iga Antibody
    Other atoms: Mg (5);
Page generated: Thu Dec 28 11:22:54 2023

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