Sodium in PDB 5kom: The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant

The structure of The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant, PDB code: 5kom was solved by N.B.Last, L.Kolmakova-Partensky, T.Shane, C.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.01 / 2.69
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	87.500, 87.500, 144.540, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 23

The structure of The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

The binding sites of Sodium atom in the The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant (pdb code 5kom). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant, PDB code: 5kom:

Sodium binding site 1 out of 1 in the The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Fluoride Channel Fluc EC2 F83I Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:62.7 occ:1.00 O A:GLY75 2.1 72.9 1.0 O B:GLY75 2.3 72.4 1.0 O B:SER78 2.3 55.9 1.0 O A:SER78 2.3 56.8 1.0 C A:GLY75 3.3 70.4 1.0 C A:SER78 3.4 59.5 1.0 C B:SER78 3.4 55.1 1.0 C B:GLY75 3.5 68.2 1.0 O A:GLY76 3.6 73.7 1.0 O B:GLY76 3.6 66.3 1.0 C A:GLY76 3.9 72.4 1.0 CA A:GLY76 3.9 72.7 1.0 C B:GLY76 3.9 67.7 1.0 CA B:GLY76 4.0 68.9 1.0 CA B:THR79 4.1 56.1 1.0 N A:GLY76 4.1 71.9 1.0 OG A:SER78 4.1 60.3 1.0 CA A:THR79 4.1 58.5 1.0 N B:GLY76 4.2 68.1 1.0 N B:THR79 4.2 54.0 1.0 N A:THR79 4.2 58.1 1.0 OG B:SER78 4.2 54.7 1.0 CA A:GLY75 4.4 69.6 1.0 N A:SER78 4.5 65.4 1.0 CA A:SER78 4.5 62.0 1.0 CA B:SER78 4.5 56.3 1.0 N B:SER78 4.5 58.5 1.0 CA B:GLY75 4.6 67.8 1.0 NH2 B:ARG19 4.6 67.2 1.0 CB B:THR79 4.6 58.2 1.0 NE B:ARG19 4.7 63.0 1.0 NH2 A:ARG19 4.7 66.7 1.0 CB A:THR79 4.8 59.0 1.0 NE A:ARG19 4.8 64.7 1.0 N A:LEU77 4.8 71.3 1.0 N B:LEU77 4.8 67.0 1.0 CB A:SER78 4.9 60.5 1.0 C A:LEU77 5.0 67.3 1.0 CZ B:ARG19 5.0 64.5 1.0 C B:LEU77 5.0 61.5 1.0

N.B.Last, L.Kolmakova-Partensky, T.Shane, C.Miller. Mechanistic Signs of Double-Barreled Structure in A Fluoride Ion Channel. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27449280
DOI: 10.7554/ELIFE.18767