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Sodium in PDB 5kki: 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K

Enzymatic activity of 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K

All present enzymatic activity of 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K:
3.2.1.17;

Protein crystallography data

The structure of 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K, PDB code: 5kki was solved by J.Broecker, O.P.Ernst, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.91 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.820, 77.820, 38.680, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 21

Other elements in 5kki:

The structure of 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K (pdb code 5kki). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K, PDB code: 5kki:

Sodium binding site 1 out of 1 in 5kki

Go back to Sodium Binding Sites List in 5kki
Sodium binding site 1 out of 1 in the 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.7-Angstrom in Situ Mylar Structure of Hen Egg-White Lysozyme (Hewl) at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:19.2
occ:1.00
 O A:SER60 2.4 17.3 1.0
OG A:SER72 2.4 22.4 1.0
O A:HOH382 2.4 17.8 1.0
O A:HOH352 2.5 19.5 1.0
O A:CYS64 2.5 16.0 1.0
O A:ARG73 2.6 19.6 1.0
CB A:SER72 3.2 26.3 1.0
C A:SER60 3.5 14.7 1.0
C A:ARG73 3.6 23.9 1.0
C A:CYS64 3.6 16.8 1.0
N A:ARG73 3.9 21.6 1.0
CA A:ASN65 4.0 18.8 1.0
C A:SER72 4.1 26.7 1.0
CA A:SER60 4.1 12.1 1.0
N A:ASN65 4.2 17.2 1.0
CA A:SER72 4.3 22.2 1.0
CB A:SER60 4.3 15.0 1.0
O A:HOH371 4.4 31.5 1.0
CA A:ARG73 4.4 22.9 1.0
N A:ASN74 4.5 19.8 1.0
N A:CYS64 4.5 16.3 1.0
O A:SER72 4.5 24.4 1.0
O A:ARG61 4.6 23.5 1.0
C A:ARG61 4.6 23.0 1.0
N A:ARG61 4.6 15.2 1.0
CA A:ASN74 4.7 20.6 1.0
OD1 A:ASN65 4.7 22.4 1.0
CL A:CL202 4.7 29.3 1.0
CA A:CYS64 4.7 15.7 1.0
CB A:THR69 4.7 18.2 1.0
N A:ASP66 4.7 13.8 1.0
CB A:ASN65 4.7 19.1 1.0
CB A:ASN74 4.8 21.9 1.0
CA A:ARG61 4.9 19.7 1.0
N A:TRP62 4.9 17.2 1.0
C A:ASN65 4.9 14.4 1.0
O A:THR69 5.0 19.6 1.0
OG A:SER60 5.0 14.2 1.0

Reference:

J.Broecker, V.Klingel, W.L.Ou, A.R.Balo, D.J.Kissick, C.M.Ogata, A.Kuo, O.P.Ernst. A Versatile System For High-Throughput in Situ X-Ray Screening and Data Collection of Soluble and Membrane-Protein Crystals. Cryst Growth Des V. 16 6318 2016.
ISSN: ISSN 1528-7483
PubMed: 28261000
DOI: 10.1021/ACS.CGD.6B00950
Page generated: Mon Oct 7 22:06:02 2024

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