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Sodium in PDB 5kj9: Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand

Enzymatic activity of Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand

All present enzymatic activity of Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand:
3.2.1.17;

Protein crystallography data

The structure of Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand, PDB code: 5kj9 was solved by M.P.Sullivan, C.G.Christian, D.C.Goldstone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.56 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.580, 78.580, 37.480, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19.6

Other elements in 5kj9:

The structure of Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand (pdb code 5kj9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand, PDB code: 5kj9:

Sodium binding site 1 out of 1 in 5kj9

Go back to Sodium Binding Sites List in 5kj9
Sodium binding site 1 out of 1 in the Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide- Functionalized Bioactive Pyridinecarbothioamide Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:13.9
occ:1.00
 O A:SER60 2.3 13.2 1.0
O A:HOH360 2.4 16.8 1.0
O A:ARG73 2.4 16.7 1.0
O A:HOH354 2.4 12.2 1.0
OG A:SER72 2.4 17.0 1.0
O A:CYS64 2.5 10.6 1.0
CB A:SER72 3.3 16.2 1.0
C A:SER60 3.4 11.6 1.0
C A:ARG73 3.5 16.2 1.0
C A:CYS64 3.5 10.0 1.0
CA A:ASN65 3.9 10.8 1.0
N A:ARG73 4.0 18.6 1.0
CA A:SER60 4.0 10.4 1.0
C A:SER72 4.1 18.4 1.0
N A:ASN65 4.2 10.5 1.0
CB A:SER60 4.2 10.3 1.0
CA A:SER72 4.3 17.6 1.0
N A:ASN74 4.4 15.1 1.0
CA A:ARG73 4.4 18.2 1.0
N A:CYS64 4.5 10.2 1.0
N A:ARG61 4.5 12.9 1.0
C A:ARG61 4.5 14.9 1.0
O A:ARG61 4.6 18.5 1.0
CA A:ASN74 4.6 13.5 1.0
CA A:CYS64 4.6 10.2 1.0
OD1 A:ASN65 4.6 14.9 1.0
N A:ASP66 4.6 10.4 1.0
CB A:THR69 4.7 11.7 1.0
O A:SER72 4.7 21.1 1.0
O A:HOH377 4.7 10.2 1.0
CB A:ASN74 4.7 14.0 1.0
CA A:ARG61 4.8 16.1 1.0
CB A:ASN65 4.8 12.0 1.0
C A:ASN65 4.8 9.8 1.0
N A:TRP62 4.9 13.7 1.0
O A:THR69 4.9 15.0 1.0
O A:HOH376 4.9 38.1 1.0

Reference:

M.Hanif, S.Moon, M.P.Sullivan, S.Movassaghi, M.Kubanik, D.C.Goldstone, T.Sohnel, S.M.Jamieson, C.G.Hartinger. Anticancer Activity of Ru- and Os(Arene) Compounds of A Maleimide-Functionalized Bioactive Pyridinecarbothioamide Ligand. J. Inorg. Biochem. V. 165 100 2016.
ISSN: ISSN 1873-3344
PubMed: 27470012
DOI: 10.1016/J.JINORGBIO.2016.06.025
Page generated: Tue Dec 15 11:10:26 2020

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