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Sodium in PDB, part 135 (files: 5361-5400), PDB 4zky-5ab3

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5361-5400 (PDB 4zky-5ab3).
  1. 4zky (Na: 1) - Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis
    Other atoms: I (1); Cl (1);
  2. 4zla (Na: 6) - Bestatin Complex Structure of Leucine Aminopeptidase From Helicobacter Pylori
    Other atoms: Zn (12);
  3. 4zls (Na: 1) - Hiv-1 Wild Type Protease with Grl-096-13A (A Boc-Derivative P2-Ligand, 3,-5-Dimethylbiphenyl P1-Ligand)
    Other atoms: Cl (3);
  4. 4zm0 (Na: 1) - Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat
  5. 4zm9 (Na: 7) - Crystal Structure of Circularly Permuted Human Asparaginase-Like Protein 1
  6. 4zmh (Na: 2) - Crystal Structure of A Five-Domain GH115 Alpha-Glucuronidase From the Marine Bacterium Saccharophagus Degradans 2-40T
  7. 4znb (Na: 2) - Metallo-Beta-Lactamase (C181S Mutant)
    Other atoms: Zn (2);
  8. 4znm (Na: 3) - Crystal Structure of SGCC5 Protein From Streptomyces Globisporus (Apo Form)
    Other atoms: Cl (2);
  9. 4zqc (Na: 1) - Tryptophan Synthase From Salmonella Typhimurium in Complex with Two Molecules of N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6F) Inhibitor in the Alpha-Site and A Single F6F Molecule in the Beta-Site at 1.54 Angstrom Resolution.
    Other atoms: F (9);
  10. 4zqi (Na: 5) - Crystal Structure of Apo D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
  11. 4zqk (Na: 1) - Structure of the Complex of Human Programmed Death-1 (Pd-1) and Its Ligand Pd-L1.
  12. 4zu4 (Na: 2) - X-Ray Structure of the 3,4-Ketoisomerase Domain of Fdtd From Shewanella Denitrificans
    Other atoms: Cl (6);
  13. 4zum (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Trifluoromethylketone Inhibitor
    Other atoms: F (6); K (2); Zn (2);
  14. 4zun (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Thiol Inhibitor
    Other atoms: K (2); Zn (6);
  15. 4zuq (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Hydroxamate Inhibitor
    Other atoms: K (2); Zn (4);
  16. 4zvj (Na: 1) - Structure of Human Triose Phosphate Isomerase K13M
    Other atoms: K (1);
  17. 4zvz (Na: 1) - Co-Crystal Structures of PP5 in Complex with 5-Methyl-7- Oxabicyclo[2.2.1]Heptane-2,3-Dicarboxylic Acid
    Other atoms: Mn (8);
  18. 4zwn (Na: 1) - Crystal Structure of A Soluble Variant of the Monoglyceride Lipase From Saccharomyces Cerevisiae
  19. 4zxn (Na: 1) - Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase
    Other atoms: Zn (1);
  20. 4zxs (Na: 2) - Hsv-1 Nuclear Egress Complex
    Other atoms: Ni (2); Zn (2); Cl (3);
  21. 4zz9 (Na: 2) - Crystal Structure of T75S Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
  22. 4zzb (Na: 5) - The Glic Pentameric Ligand-Gated Ion Channel Locally-Closed Form Complexed to Xenon
    Other atoms: Xe (21); Cl (5);
  23. 4zzc (Na: 6) - The Glic Pentameric Ligand-Gated Ion Channel Open Form Complexed to Xenon
    Other atoms: Xe (35); Cl (5);
  24. 5a0y (Na: 2) - Methyl-Coenzyme M Reductase From Methanothermobacter Marburgensis at 1.1 A Resolution
    Other atoms: Ni (2); Mg (16); K (1); Cl (2);
  25. 5a10 (Na: 1) - The Crystal Structure of Ta-Tfp, A Thiocyanate-Forming Protein Involved in Glucosinolate Breakdown (Space Group C2)
  26. 5a1a (Na: 8) - 2.2 A Resolution Cryo-Em Structure of Beta-Galactosidase in Complex with A Cell-Permeant Inhibitor
    Other atoms: Mg (8);
  27. 5a1s (Na: 7) - Crystal Structure of the Sodium-Dependent Citrate Symporter Secits Form Salmonella Enterica.
    Other atoms: Cl (3);
  28. 5a25 (Na: 4) - Rational Engineering of A Mesophilic Carbonic Anhydrase to An Extreme Halotolerant Biocatalyst
    Other atoms: Zn (2);
  29. 5a2m (Na: 2) - Thrombin Inhibitor
    Other atoms: Cl (1);
  30. 5a2s (Na: 2) - Potent, Selective and Cns-Penetrant Tetrasubstituted Cyclopropane Class Iia Histone Deacetylase (Hdac) Inhibitors
    Other atoms: F (4); Zn (4);
  31. 5a3l (Na: 5) - Structure of CEA1A in Complex with N-Acetylglucosamine
    Other atoms: Ca (4);
  32. 5a3m (Na: 4) - Structure of CEA1A in Complex with Chitobiose
    Other atoms: Ca (4);
  33. 5a3w (Na: 1) - Crystal Structure of Human Plu-1 (JARID1B) in Complex with Pyridine-2, 6-Dicarboxylic Acid (Pdca)
    Other atoms: Mn (1); Zn (2);
  34. 5a43 (Na: 1) - Crystal Structure of A Dual Topology Fluoride Ion Channel.
    Other atoms: F (2);
  35. 5a71 (Na: 5) - Open and Closed Conformations and Protonation States of Candida Antarctica Lipase B: Atomic Resolution Native
    Other atoms: K (4);
  36. 5a8e (Na: 2) - Thermostabilised BETA1-Adrenoceptor with Rationally Designed Inverse Agonist 7-Methylcyanopindolol Bound
  37. 5a8j (Na: 1) - Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius
    Other atoms: Cl (2);
  38. 5a8w (Na: 1) - Methyl-Coenzyme M Reductase II From Methanothermobacter Wolfeii at 1. 8 A Resolution
    Other atoms: Ni (4);
  39. 5a95 (Na: 1) - Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 2
    Other atoms: Mg (5); Cl (12);
  40. 5ab3 (Na: 4) - S.Enterica Hisa Mutant D7N, D10G, DUP13-15, Q24L, G102A
Page generated: Fri Dec 24 09:47:38 2021

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