Sodium in PDB, part 135 (files: 5361-5400),
PDB 4zm0-5ac7
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5361-5400 (PDB 4zm0-5ac7).
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4zm0 (Na: 1) - Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat
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4zm9 (Na: 7) - Crystal Structure of Circularly Permuted Human Asparaginase-Like Protein 1
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4zmh (Na: 2) - Crystal Structure of A Five-Domain GH115 Alpha-Glucuronidase From the Marine Bacterium Saccharophagus Degradans 2-40T
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4znb (Na: 2) - Metallo-Beta-Lactamase (C181S Mutant)
Other atoms:
Zn (2);
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4znm (Na: 3) - Crystal Structure of SGCC5 Protein From Streptomyces Globisporus (Apo Form)
Other atoms:
Cl (2);
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4zqc (Na: 1) - Tryptophan Synthase From Salmonella Typhimurium in Complex with Two Molecules of N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6F) Inhibitor in the Alpha-Site and A Single F6F Molecule in the Beta-Site at 1.54 Angstrom Resolution.
Other atoms:
F (9);
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4zqi (Na: 5) - Crystal Structure of Apo D-Alanine-D-Alanine Ligase(Ddl) From Yersinia Pestis
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4zqk (Na: 1) - Structure of the Complex of Human Programmed Death-1 (Pd-1) and Its Ligand Pd-L1.
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4zu4 (Na: 2) - X-Ray Structure of the 3,4-Ketoisomerase Domain of Fdtd From Shewanella Denitrificans
Other atoms:
Cl (6);
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4zum (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Trifluoromethylketone Inhibitor
Other atoms:
F (6);
K (2);
Zn (2);
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4zun (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Thiol Inhibitor
Other atoms:
K (2);
Zn (6);
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4zuq (Na: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase From Mycoplana Ramosa in Complex with A Hydroxamate Inhibitor
Other atoms:
K (2);
Zn (4);
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4zvj (Na: 1) - Structure of Human Triose Phosphate Isomerase K13M
Other atoms:
K (1);
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4zvz (Na: 1) - Co-Crystal Structures of PP5 in Complex with 5-Methyl-7- Oxabicyclo[2.2.1]Heptane-2,3-Dicarboxylic Acid
Other atoms:
Mn (8);
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4zwn (Na: 1) - Crystal Structure of A Soluble Variant of the Monoglyceride Lipase From Saccharomyces Cerevisiae
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4zxn (Na: 1) - Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase
Other atoms:
Zn (1);
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4zxs (Na: 2) - Hsv-1 Nuclear Egress Complex
Other atoms:
Ni (2);
Zn (2);
Cl (3);
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4zz9 (Na: 2) - Crystal Structure of T75S Mutant of Triosephosphate Isomerase From Plasmodium Falciparum
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4zzb (Na: 5) - The Glic Pentameric Ligand-Gated Ion Channel Locally-Closed Form Complexed to Xenon
Other atoms:
Xe (21);
Cl (5);
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4zzc (Na: 6) - The Glic Pentameric Ligand-Gated Ion Channel Open Form Complexed to Xenon
Other atoms:
Xe (35);
Cl (5);
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5a0y (Na: 2) - Methyl-Coenzyme M Reductase From Methanothermobacter Marburgensis at 1.1 A Resolution
Other atoms:
Ni (2);
Mg (16);
K (1);
Cl (2);
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5a10 (Na: 1) - The Crystal Structure of Ta-Tfp, A Thiocyanate-Forming Protein Involved in Glucosinolate Breakdown (Space Group C2)
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5a1a (Na: 8) - 2.2 A Resolution Cryo-Em Structure of Beta-Galactosidase in Complex with A Cell-Permeant Inhibitor
Other atoms:
Mg (8);
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5a1s (Na: 7) - Crystal Structure of the Sodium-Dependent Citrate Symporter Secits Form Salmonella Enterica.
Other atoms:
Cl (3);
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5a25 (Na: 4) - Rational Engineering of A Mesophilic Carbonic Anhydrase to An Extreme Halotolerant Biocatalyst
Other atoms:
Zn (2);
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5a2m (Na: 2) - Thrombin Inhibitor
Other atoms:
Cl (1);
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5a2s (Na: 2) - Potent, Selective and Cns-Penetrant Tetrasubstituted Cyclopropane Class Iia Histone Deacetylase (Hdac) Inhibitors
Other atoms:
F (4);
Zn (4);
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5a3l (Na: 5) - Structure of CEA1A in Complex with N-Acetylglucosamine
Other atoms:
Ca (4);
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5a3m (Na: 4) - Structure of CEA1A in Complex with Chitobiose
Other atoms:
Ca (4);
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5a3w (Na: 1) - Crystal Structure of Human Plu-1 (JARID1B) in Complex with Pyridine-2, 6-Dicarboxylic Acid (Pdca)
Other atoms:
Mn (1);
Zn (2);
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5a43 (Na: 1) - Crystal Structure of A Dual Topology Fluoride Ion Channel.
Other atoms:
F (2);
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5a71 (Na: 5) - Open and Closed Conformations and Protonation States of Candida Antarctica Lipase B: Atomic Resolution Native
Other atoms:
K (4);
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5a8e (Na: 2) - Thermostabilised BETA1-Adrenoceptor with Rationally Designed Inverse Agonist 7-Methylcyanopindolol Bound
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5a8j (Na: 1) - Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius
Other atoms:
Cl (2);
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5a8w (Na: 1) - Methyl-Coenzyme M Reductase II From Methanothermobacter Wolfeii at 1. 8 A Resolution
Other atoms:
Ni (4);
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5a95 (Na: 1) - Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 2
Other atoms:
Mg (5);
Cl (12);
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5ab3 (Na: 4) - S.Enterica Hisa Mutant D7N, D10G, DUP13-15, Q24L, G102A
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5abd (Na: 2) - Crystal Structure of Vegfr-1 Domain 2 in Presence of Cu
Other atoms:
Cu (5);
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5abj (Na: 1) - Structure of Coxsackievirus A16 in Complex with GPP3
Other atoms:
Cl (1);
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5ac7 (Na: 1) - S. Enterica Hisa with Mutations D7N, D10G, DUP13-15
Page generated: Thu Dec 28 11:21:31 2023
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