Sodium in PDB 5a8j: Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius

The structure of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius, PDB code: 5a8j was solved by L.Hoffmann, K.Anders, J.Reimann, U.Linne, L.-O.Essen, S.-V.Albers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.658 / 1.46
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.640, 74.280, 145.550, 90.00, 90.00, 90.00
R / Rfree (%)	16.51 / 20.13

The structure of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius (pdb code 5a8j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius, PDB code: 5a8j:

Sodium binding site 1 out of 1 in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1374 b:43.9 occ:1.00 OE1 A:GLU167 2.4 33.8 1.0 OD1 A:ASP347 2.9 27.1 1.0 OD2 A:ASP347 2.9 33.2 1.0 HB2 A:LYS349 3.1 18.4 1.0 HD2 A:LYS349 3.1 18.5 1.0 CG A:ASP347 3.2 30.3 1.0 O A:HOH2129 3.3 35.1 1.0 CD A:GLU167 3.5 33.1 1.0 HG3 A:LYS349 3.7 19.4 1.0 OE2 A:GLU167 3.9 36.4 1.0 O A:HOH2210 3.9 28.9 1.0 H A:LYS349 3.9 16.4 1.0 CB A:LYS349 3.9 15.3 1.0 CD A:LYS349 4.0 15.4 1.0 CG A:LYS349 4.1 16.1 1.0 HD2 A:PRO348 4.1 28.4 1.0 HD3 A:LYS349 4.4 18.5 1.0 HB3 A:LYS349 4.5 18.4 1.0 HE2 A:HIS187 4.5 15.7 1.0 HZ1 A:LYS349 4.5 20.4 1.0 HA A:GLU167 4.6 22.1 1.0 H A:VAL350 4.6 14.7 1.0 N A:LYS349 4.6 13.6 1.0 CB A:ASP347 4.7 28.5 1.0 HB3 A:GLU167 4.7 27.8 1.0 HG21 A:VAL350 4.7 18.2 1.0 CG A:GLU167 4.8 27.9 1.0 HE1 A:HIS187 4.8 15.7 1.0 NE2 A:HIS187 4.8 13.1 1.0 HB2 A:ASP347 4.9 34.2 1.0 CA A:LYS349 4.9 12.2 1.0 CD A:PRO348 5.0 23.6 1.0 HA A:ASP347 5.0 32.7 1.0 CE1 A:HIS187 5.0 13.1 1.0

L.Hoffmann, K.Anders, J.Reimann, U.Linne, L.-O.Essen, S.-V.Albers. Phosphorylation-Dependent Interaction Between An Archaeal Von Willebrand and Fha Domain Recruits Arna-Arnb Complex to Dna For Repression of Motility To Be Published.