Sodium in PDB 4zxn: Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase

Enzymatic activity of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase

All present enzymatic activity of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase:
3.1.1.53;

Protein crystallography data

The structure of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase, PDB code: 4zxn was solved by M.J.G.Bakkers, L.J.Feitsma, E.G.Huizinga, R.J.De Groot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	35.49 / 2.20
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	60.710, 184.370, 76.900, 90.00, 90.00, 90.00
*R / R_free (%)*	23.2 / 27.8

Other elements in 4zxn:

The structure of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase (pdb code 4zxn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase, PDB code: 4zxn:

Sodium binding site 1 out of 1 in 4zxn

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Sodium Binding Sites List in 4zxn

Sodium binding site 1 out of 1 in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na507 b:48.8 occ:1.00	OD1	A:ASP225	2.3	49.6	1.0
	O	A:LEU277	2.4	48.9	1.0
	OG	A:SER273	2.6	51.0	1.0
	O	A:SER226	2.6	49.6	1.0
	O	A:GLU275	2.7	52.2	1.0
	OE1	A:GLN227	3.4	47.1	1.0
	C	A:LEU277	3.5	50.2	1.0
	CG	A:ASP225	3.5	48.8	1.0
	C	A:SER226	3.5	48.9	1.0
	CB	A:SER273	3.6	50.5	1.0
	N	A:SER226	3.7	50.5	1.0
	N	A:LEU277	3.8	52.1	1.0
	C	A:GLU275	3.9	54.1	1.0
	C	A:PHE276	3.9	53.5	1.0
	OD2	A:ASP225	4.1	47.3	1.0
	O	A:PHE276	4.2	54.2	1.0
	CB	A:PHE276	4.2	52.9	1.0
	CA	A:SER226	4.2	49.9	1.0
	CA	A:LEU277	4.2	51.6	1.0
	CA	A:SER273	4.4	50.6	1.0
	N	A:LEU278	4.4	50.5	1.0
	CA	A:PHE276	4.4	54.3	1.0
	N	A:GLN227	4.4	47.3	1.0
	CB	A:GLN227	4.4	45.1	1.0
	CD	A:GLN227	4.5	46.1	1.0
	N	A:PHE276	4.6	55.2	1.0
	C	A:ASP225	4.6	50.5	1.0
	CA	A:GLN227	4.6	46.4	1.0
	CA	A:LEU278	4.6	49.4	1.0
	CA	A:ASP225	4.6	51.4	1.0
	CB	A:ASP225	4.7	49.8	1.0
	N	A:GLU275	4.7	54.5	1.0
	O	A:HOH619	4.8	55.5	1.0
	CA	A:GLU275	4.9	55.5	1.0
	C	A:SER273	5.0	52.6	1.0

Reference:

M.J.G.Bakkers, L.J.Feitsma, E.G.Huizinga, R.J.De Groot. Crystal Structures of Murine Coronavirus Hemagglutinin-Esterases Reveal Structural Basis For Esterase Substrate Specificity To Be Published.

Page generated: Tue Dec 15 10:10:25 2020

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