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Sodium in PDB, part 276 (files: 11001-11040), PDB 8pfu-9icy

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11001-11040 (PDB 8pfu-9icy).
  1. 8pfu (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K3[RU2(CO3)4] in Condition A
    Other atoms: Ru (8);
  2. 8pfw (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition A
    Other atoms: Ru (6); Cl (1);
  3. 8pfx (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(D-P-Fphf)(CO3)3] in Condition B
    Other atoms: Ru (6); F (2);
  4. 8pfy (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B
    Other atoms: Ru (1); Cl (1);
  5. 8sgd (Na: 13) - Crystal Structure of CDC3(G) - CDC10(Delta 1-10) Heterocomplex From Saccharomyces Cerevisiae
    Other atoms: Mg (2);
  6. 8si2 (Na: 2) - Cryo-Em Structure of TRPM7 in MSP2N2 Nanodisc in Apo State
  7. 8slx (Na: 1) - Rat TRPV2 Bound with 1 Cbd Ligand in Nanodiscs
  8. 8sly (Na: 1) - Rat TRPV2 Bound with 2 Cbd Ligands in Nanodiscs
  9. 8sng (Na: 2) - Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form)
    Other atoms: Mg (2);
  10. 8sv0 (Na: 2) - The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII
  11. 8t1b (Na: 4) - Cryo-Em Structure of Full-Length Human TRPV4 in Apo State
  12. 8t1e (Na: 3) - Closed-State Cryo-Em Structure of Full-Length Human TRPV4 in the Presence of 4A-Pdd
  13. 9icb (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and COCL2
    Other atoms: Co (2);
  14. 9icc (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and CRCL3
    Other atoms: Cr (1);
  15. 9ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CUCL2 (0.1 Millimolar)
  16. 9icf (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Zn (2);
  17. 9icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (3);
  18. 9ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (3);
  19. 9ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (2);
  20. 9icj (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna
  21. 9ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Artificial Mother Liquor
  22. 9icl (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Pyrophosphate and MNCL2
    Other atoms: Mn (2);
  23. 9icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Double Stranded Dna (No 5'-Phosphate)
  24. 9icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MGCL2
    Other atoms: Mg (1);
  25. 9ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Dttp and MGCL2
  26. 9icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Pyrophosphate (1 Millimolar) and MGCL2 (5 Millimolar)
  27. 9icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  28. 9icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxycytidine-5'-Triphosphate, Soaked in the Presence of Dctp and MNCL2
    Other atoms: Mn (2);
  29. 9ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MNCL2
    Other atoms: Mn (2);
  30. 9ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyguanosine-5'-Triphosphate, Soaked in the Presence of Dgtp and MNCL2
    Other atoms: Mn (2);
  31. 9icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  32. 9icv (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Zn (3);
  33. 9icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Native Structure
  34. 9icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna (Non Gapped Dna Only)
  35. 9icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna (Non Gapped Dna Only)
Page generated: Fri Jul 28 12:35:49 2023

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