Sodium in PDB, part 249 (files: 9921-9960),
PDB 7jyw-7kou
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9921-9960 (PDB 7jyw-7kou).
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7jyw (Na: 2) - Crystal Structure of Hla A*2402 in Complex with Tyqwiirnw, An 9-Mer Influenza Epitope
Other atoms:
Ca (1);
Ni (1);
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7jyy (Na: 3) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).
Other atoms:
Mg (2);
Zn (4);
Cl (1);
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7jz0 (Na: 4) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1) and S-Adenosyl-L-Homocysteine (Sah).
Other atoms:
Zn (4);
Cl (7);
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7jz2 (Na: 3) - Succinate: Quinone Oxidoreductase Sqr From E.Coli K12
Other atoms:
Fe (30);
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7k15 (Na: 1) - Crystal Structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist Mk-D-046
Other atoms:
F (1);
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7k16 (Na: 1) - Tamana Bat Virus XRRNA1
Other atoms:
Mg (5);
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7k26 (Na: 7) - Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate
Other atoms:
Fe (12);
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7k3v (Na: 80) - Apoferritin Structure at 1.34 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with K3 Detector
Other atoms:
Zn (254);
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7k3w (Na: 112) - Apoferritin Structure at 1.36 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector
Other atoms:
Zn (270);
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7k4o (Na: 1) - Tannin Acyl Hydrolase From Aspergillus Niger
Other atoms:
Cl (2);
Ca (1);
Zn (4);
-
7k5v (Na: 4) - Oxa-48 Bound By Compound 3.1
Other atoms:
Cl (1);
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7k64 (Na: 1) - Binary Titrated Soak Structure of Alkanesulfonate Monooxygenase Msud From Pseudomonas Fluorescens with Fmn
Other atoms:
Cl (1);
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7k88 (Na: 1) - Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether
Other atoms:
Fe (2);
-
7k89 (Na: 2) - Crystal Structure of Bovine RPE65 in Complex with 4-Fluoro-Emixustat and Palmitate
Other atoms:
Fe (2);
F (2);
-
7k96 (Na: 4) - Human Dna Polymerase Beta Ternary Complex with Templating Cytosine and Incoming Deoxyguanosine Diphosphate
Other atoms:
Cl (9);
Ca (3);
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7k97 (Na: 2) - Human Dna Polymerase Beta Dgdp Product Complex with MN2+
Other atoms:
Mn (8);
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7kb1 (Na: 1) - Complex of O-Acety-L-Homoserine Aminocarboxypropyltransferase (Mety) From Thermotoga Maritima and A Key Reaction Intermediate
Other atoms:
Mg (1);
-
7kbu (Na: 1) - Structure of Hevin Fs-Ec
Other atoms:
Cl (4);
Ca (6);
-
7kds (Na: 1) - Crystal Structure of Acetyl-Coa Synthetase 2 in Complex with Adenosine-5'-Propylphosphate From Candida Albicans
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7ke1 (Na: 1) - Factor H Enhancing Human Antibody Fragment (Fab) to Meningococcal Factor H Binding Protein
Other atoms:
Cl (1);
-
7kgp (Na: 4) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N316-324
Other atoms:
Cd (2);
-
7kgt (Na: 1) - Crystal Structure of Hla-A*0201 in Complex with Sars-Cov-2 N226-234
Other atoms:
Cd (2);
-
7kia (Na: 2) - Crystal Structure of FGFR2 Kinase Domain Gatekeeper Mutant V564F in Complex with Covalent Compound 19
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7kk8 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81T with Bromide
Other atoms:
Br (2);
F (1);
-
7kk9 (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A/T82A with Bromide
Other atoms:
Br (2);
-
7kka (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81A with Bromide
Other atoms:
Br (2);
F (2);
-
7kkb (Na: 1) - Fluoride Channel Fluc-EC2 Mutant S81C with Bromide
Other atoms:
Br (2);
F (2);
-
7kkg (Na: 3) - Dihydrodipicolinate Synthase (Dhdps) From C.Jejuni, N84D Mutant with Pyruvate Bound in the Active Site and L-Lysine Bound at the Allosteric Site
Other atoms:
Mg (21);
-
7kkh (Na: 2) - P1A4 Fab in Complex with ARS1620
Other atoms:
Cl (1);
F (2);
-
7kkr (Na: 1) - Fluoride Channel Fluc-EC2 Wild-Type with Bromide
Other atoms:
Br (2);
-
7km6 (Na: 2) - APOBEC3B Antibody 5G7 Fv-Clasp
Other atoms:
Cl (3);
-
7kme (Na: 2) - Crystal Structure of Human Alpha-Thrombin Inhibited with SEL2711.
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7kmj (Na: 3) - Hsa Siglec and Unique Domains in Complex with Sialyl Lewis C
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7kn8 (Na: 2) - Crystal Structure of the GH74 Xyloglucanase From Xanthomonas Campestris (XCC1752)
Other atoms:
I (14);
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7knf (Na: 4) - 1.80A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-1 Nhoh)
Other atoms:
Zn (4);
-
7kng (Na: 4) - 2.10A Resolution Structure of Independent Phosphoglycerate Mutase From C. Elegans in Complex with A Macrocyclic Peptide Inhibitor (Ce-2 Y7F)
Other atoms:
Zn (4);
Cl (4);
-
7knk (Na: 1) - Structure of Hen Egg-White Lysozyme Grown with Kitchen Recipe
Other atoms:
Cl (1);
-
7kom (Na: 1) - High Resolution Crystal Structure of Putative Pterin Binding Protein Prur (VV2_1280) From Vibrio Vulnificus CMCP6
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7kos (Na: 5) - 1.50 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
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7kou (Na: 10) - 1.83 Angstroms Resolution Crystal Structure of Putative Pterin Binding Protein Prur (ATU3496) From Agrobacterium Fabrum Str. C58
Other atoms:
Cl (2);
Page generated: Mon Aug 18 10:18:19 2025
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