Sodium in PDB 7k88: Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether

Enzymatic activity of Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether

All present enzymatic activity of Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether:
3.1.1.64; 5.3.3.22;

Protein crystallography data

The structure of Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether, PDB code: 7k88 was solved by P.D.Kiser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.90 / 2.10
*Space group*	P 6₅
*Cell size a, b, c (Å), α, β, γ (°)*	175.917, 175.917, 86.314, 90, 90, 120
*R / R_free (%)*	18.9 / 22

Other elements in 7k88:

The structure of Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether (pdb code 7k88). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether, PDB code: 7k88:

Sodium binding site 1 out of 1 in 7k88

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Sodium Binding Sites List in 7k88

Sodium binding site 1 out of 1 in the Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Bovine RPE65 in Complex with Hexaethylene Glycol Monooctyl Ether within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na604 b:84.6 occ:1.00	O5	B:PG4603	2.5	68.5	1.0
	O3	B:PG4603	2.9	69.6	1.0
	O1	B:PG4603	3.0	79.7	1.0
	O2	B:PG4603	3.0	80.7	1.0
	O4	B:PG4603	3.2	66.6	1.0
	O	B:GLN461	3.3	51.6	1.0
	C8	B:PG4603	3.7	68.3	1.0
	C6	B:PG4603	3.7	67.6	1.0
	C3	B:PG4603	3.7	75.9	1.0
	C2	B:PG4603	3.8	81.8	1.0
	C1	B:PG4603	3.8	80.3	1.0
	C7	B:PG4603	3.8	67.8	1.0
	C5	B:PG4603	3.9	69.0	1.0
	C4	B:PG4603	3.9	73.5	1.0
	C	B:GLN461	4.6	49.9	1.0

Reference:

P.D.Kiser, P.D.Kiser. N/A N/A.

Page generated: Mon Aug 18 10:20:39 2025

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