Sodium in PDB, part 241 (files: 9601-9640),
PDB 7e4c-7f6s
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9601-9640 (PDB 7e4c-7f6s).
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7e4c (Na: 1) - Crystal Structure of Mif Bound to COMPOUND11
Other atoms:
Cl (13);
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7e4e (Na: 30) - uc(Nmr) Solution Structures of Dna Minidumbbell Containing A N1- Methyladenine
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7e50 (Na: 3) - Crystal Structure of Human Microplasmin in Complex with Kazal-Type Inhibitor Aati
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7e5j (Na: 3) - Crystal Structure of Beta-Glucosidase From Thermoanaerobacterium Saccharolyticum
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7e5q (Na: 8) - Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis at Acidic pH
Other atoms:
Cl (9);
Fe (2);
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7e9u (Na: 2) - Trehalase of Arabidopsis Thaliana
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7eaf (Na: 1) - Crystal Structure of Sam-I Riboswitch with the Actinomyces-1 K-Turn
Other atoms:
Ba (6);
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7edb (Na: 1) - ECOT38I Restriction Endonuclease Complexed with Dna
Other atoms:
Cl (2);
Ca (4);
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7edt (Na: 1) - Rna Duplex Containing Cc Mispairs
Other atoms:
Br (2);
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7eeb (Na: 2) - Structure of the Catspermasome
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7egk (Na: 3) - Bicarbonate Transporter Complex Sbta-Sbtb Bound to Amp
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7egl (Na: 1) - Bicarbonate Transporter Complex Sbta-Sbtb Bound to HCO3-
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7ehf (Na: 1) - Crystal Structure of the Aminoglycoside Resistance Methyltransferase NPMB1
Other atoms:
Cl (1);
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7ei0 (Na: 2) - Crystal Structure of Falcipain 2 From 3D7 Strain
Other atoms:
Cl (1);
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7emk (Na: 17) - Dendrorhynchus Zhejiangensis Ferritin
Other atoms:
Cl (21);
Fe (8);
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7ep0 (Na: 4) - Crystal Structure of ZYG11B Bound to Gste Degron
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7eqj (Na: 4) - Crystal Structure of E. Coli Valine Trna
Other atoms:
Mg (6);
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7eqm (Na: 12) - Apo Truncated Vhchip (Delta 1-19)
Other atoms:
Mg (3);
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7eqr (Na: 18) - Crystal Structure of Truncated (Delta 1-19) Chitoporin Vhchip From Vibrio Harveyi in Complex with Chitohexaose
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7esk (Na: 1) - Crystal Structure of A L-Rhamnose-Alpha-1,4-D-Glucuronate Lyase From Fusarium Oxysporum 12S, Ligand Free Form
Other atoms:
Ca (1);
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7esl (Na: 1) - Crystal Structure of A L-Rhamnose-Alpha-1,4-D-Glucuronate Lyase From Fusarium Oxysporum 12S, N247A N-Glycan Free Form
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7esm (Na: 1) - Crystal Structure of A L-Rhamnose-Alpha-1,4-D-Glucuronate Lyase From Fusarium Oxysporum 12S, L-Rha Complex
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7ets (Na: 1) - Crystal Structure of Crp Protein From Gardnerella Vaginalis
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7ev1 (Na: 1) - Crystal Structure of Li-Cadherin EC1-2
Other atoms:
Ca (6);
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7ev7 (Na: 4) - Bovine Heart Cytochrome C Oxidase in the Carbon Monoxide-Bound Fully Reduced State at A 50 K
Other atoms:
Zn (2);
Mg (2);
Fe (4);
Cu (6);
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7evb (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 77% Gtp/23% and 2 Na+
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7evc (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 60% Gtp/40% Gdp and 2 Na+
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7evd (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 53% Gtp/47% and 2 Na+
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7eve (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 100% Gdp and 2 Na+
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7evi (Na: 1) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 79% Gtp, 21% Gdp, Na+, MG2+
Other atoms:
Mg (1);
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7evk (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 78% Gtp, 22% Gdp, Na+
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7evl (Na: 2) - Odinarchaeota Tubulin (Odintubulin) H393D Mutant, in A Protofilament Arrangement, Bound to 64% Gtp/36% Gdp and 2 Na+ in A Small Unit Cell
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7exx (Na: 1) - The Structure of Dndg
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7ey3 (Na: 2) - Double Cysteine Mutations in T1 Lipase
Other atoms:
Ca (2);
Zn (2);
Cl (2);
-
7ezw (Na: 1) - Cyclic Peptide That Interacts with the EIF4E Capped-Mrna Binding Site
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7f0n (Na: 10) - Structure of Deamidated Ubiquitin
Other atoms:
K (1);
Mg (1);
-
7f35 (Na: 8) - Crystal Structure of Anti S-Gatifloxacin Antibody Fab Fragment in Complex with S-Gatifloxacin
Other atoms:
F (3);
Cl (1);
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7f4x (Na: 1) - Joint Neutron and X-Ray Crystal Structure of the Nucleotide-Binding Domain of HSP72 in Complex with Adp
Other atoms:
Mg (1);
-
7f5i (Na: 1) - X-Ray Structure of Clostridium Perfringens-Specific Amidase Endolysin
Other atoms:
Zn (1);
-
7f6s (Na: 1) - Crystal Structure of Metal-Citrate-Binding Mutant (T199A) Protein (Mcta) of Abc Transporter in Apo State
Other atoms:
Cl (1);
Page generated: Sat Aug 23 06:30:30 2025
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