Atomistry » Sodium » PDB 7e4c-7f6s » 7eeb
Atomistry »
  Sodium »
    PDB 7e4c-7f6s »
      7eeb »

Sodium in PDB 7eeb: Structure of the Catspermasome

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Catspermasome (pdb code 7eeb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of the Catspermasome, PDB code: 7eeb:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 7eeb

Go back to Sodium Binding Sites List in 7eeb
Sodium binding site 1 out of 2 in the Structure of the Catspermasome


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Catspermasome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na701

b:65.8
occ:1.00
OD1 D:ASP237 2.8 70.7 1.0
O A:LEU535 3.1 71.6 1.0
CG D:ASP237 3.7 70.7 1.0
O D:GLN236 4.0 70.7 1.0
CB D:ASP237 4.1 70.7 1.0
C A:LEU535 4.1 71.6 1.0
O B:LEU294 4.1 60.2 1.0
OD1 C:ASP227 4.2 64.2 1.0
CA A:ASP536 4.4 74.4 1.0
OD1 B:ASP295 4.5 65.3 1.0
NA D:NA1001 4.5 75.2 1.0
CA D:ASP237 4.6 70.7 1.0
OD1 A:ASP536 4.6 74.4 1.0
CA C:ASP227 4.7 64.2 1.0
N A:ASP536 4.7 74.4 1.0
O A:THR534 4.7 73.0 1.0
OD2 D:ASP237 4.8 70.7 1.0
CB A:LEU535 4.9 71.6 1.0
CB C:ASP227 4.9 64.2 1.0
CB A:ASP536 4.9 74.4 1.0
C D:GLN236 4.9 70.7 1.0
CG A:ASP536 5.0 74.4 1.0

Sodium binding site 2 out of 2 in 7eeb

Go back to Sodium Binding Sites List in 7eeb
Sodium binding site 2 out of 2 in the Structure of the Catspermasome


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Catspermasome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na1001

b:75.2
occ:1.00
OD1 D:ASP237 2.5 70.7 1.0
OD1 A:ASP536 2.8 74.4 1.0
CG D:ASP237 3.1 70.7 1.0
OD2 D:ASP237 3.1 70.7 1.0
OD1 C:ASP227 3.8 64.2 1.0
OD1 A:ASP537 3.9 78.1 1.0
CG A:ASP536 3.9 74.4 1.0
N C:GLY228 4.1 64.3 1.0
CE1 B:HIS296 4.3 67.2 1.0
CG A:ASP537 4.4 78.1 1.0
N A:ASP537 4.4 78.1 1.0
CB D:ASP237 4.4 70.7 1.0
OD1 B:ASP295 4.4 65.3 1.0
N D:GLY238 4.5 75.8 1.0
NA A:NA701 4.5 65.8 1.0
OD2 A:ASP536 4.5 74.4 1.0
CA C:GLY228 4.6 64.3 1.0
OD2 A:ASP537 4.6 78.1 1.0
ND1 B:HIS296 4.6 67.2 1.0
CG C:ASP227 4.7 64.2 1.0
CA D:ASP237 4.7 70.7 1.0
C D:ASP237 4.8 70.7 1.0
CA A:ASP536 4.8 74.4 1.0
C C:ASP227 5.0 64.2 1.0
CB A:ASP536 5.0 74.4 1.0
CA C:ASP227 5.0 64.2 1.0

Reference:

S.Lin, M.Ke, Y.Zhang, Z.Yan, J.Wu. Structure of A Mammalian Sperm Cation Channel Complex. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34225353
DOI: 10.1038/S41586-021-03742-6
Page generated: Mon Aug 18 09:41:44 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy