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Sodium in PDB 7ets: Crystal Structure of Crp Protein From Gardnerella Vaginalis

Protein crystallography data

The structure of Crystal Structure of Crp Protein From Gardnerella Vaginalis, PDB code: 7ets was solved by H.J.Dong, S.Wang, J.M.Zhang, L.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.00 / 2.22
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.953, 85.471, 56.022, 90, 116.69, 90
R / Rfree (%) 23.8 / 27.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Crp Protein From Gardnerella Vaginalis (pdb code 7ets). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Crp Protein From Gardnerella Vaginalis, PDB code: 7ets:

Sodium binding site 1 out of 1 in 7ets

Go back to Sodium Binding Sites List in 7ets
Sodium binding site 1 out of 1 in the Crystal Structure of Crp Protein From Gardnerella Vaginalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Crp Protein From Gardnerella Vaginalis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na302

b:99.5
occ:1.00
OG1 B:THR167 3.0 65.3 1.0
O B:ARG163 3.3 62.8 1.0
CB B:ARG163 3.8 67.6 1.0
CA B:ARG163 3.9 67.0 1.0
C B:ARG163 4.0 58.2 1.0
O B:LEU197 4.0 70.2 1.0
N B:THR167 4.3 62.9 1.0
CB B:THR167 4.3 61.1 1.0
O B:VAL198 4.3 72.0 1.0
CE1 B:HIS151 4.4 120.0 1.0
CG B:LYS166 4.4 83.5 1.0
CG B:ARG163 4.5 72.2 1.0
CB B:LYS166 4.5 71.6 1.0
CA B:THR167 4.6 59.9 1.0
CD B:LYS166 4.6 101.9 1.0
CE B:MET158 4.7 91.4 1.0
CA B:VAL198 4.7 72.4 1.0
CD B:ARG163 4.7 87.1 1.0
CE B:LYS166 4.9 109.4 1.0
C B:LYS166 4.9 63.0 1.0
C B:VAL198 4.9 75.8 1.0
CD1 B:LEU155 4.9 116.6 1.0

Reference:

H.J.Dong, S.Wang, J.M.Zhang, L.Gu. Crystal Structure of Crp Protein From Gardnerella Vaginalis To Be Published.
Page generated: Mon Aug 18 09:44:20 2025

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