Sodium in PDB, part 224 (files: 8921-8960),
PDB 6u6u-6v04
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8921-8960 (PDB 6u6u-6v04).
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6u6u (Na: 1) - IL36R Extracellular Domain in Complex with BI655130 Fab
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6u7o (Na: 1) - Hiv-1 Wild Type Protease with Grl-00819A, with Phenyl-Boronic-Acid As P2'-Ligand and with A 6-5-5-Ring Fused Crown-Like Tetrahydropyranofuran As the P2-Ligand
Other atoms:
Cl (4);
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6u7p (Na: 1) - Hiv-1 Wild Type Protease with Grl-03119A, with Phenyl-Boronic-Acid As P2'-Ligand and with A Hexahydro-4H-Furo-Pyran As the P2-Ligand
Other atoms:
Cl (5);
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6u8t (Na: 1) - Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin
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6u98 (Na: 1) - HSP90A Ntd K58R Bound Reversibly to Sulfonyl Fluoride 6
Other atoms:
F (1);
K (1);
I (1);
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6u9j (Na: 1) - Crystal Structure of Chux
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6u9u (Na: 6) - Structure of GM9_TH8SEQ732127 Fab
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6uai (Na: 3) - Imidazole-Triggered Ras-Specific Subtilisin SUBT_BACAM Complexed with Ysam Peptide
Other atoms:
Cl (1);
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6uao (Na: 1) - Imidazole-Triggered Ras-Specific Subtilisin SUBT_BACAM Complexed with the Peptide Eeysam
Other atoms:
Cl (1);
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6uaq (Na: 1) - Crystal Structure of A GH128 (Subgroup I) Endo-Beta-1,3-Glucanase From Amycolatopsis Mediterranei (AMGH128_I)
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6ube (Na: 2) - Azide-Triggered Subtilisin SUBT_BACAM Complexed with the Peptide Lfral
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6ubh (Na: 3) - Structure of the MM7 Erbin Pdz Variant in Complex with A High-Affinity Peptide
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6ubn (Na: 1) - Crystal Structure of D678E Goxa Bound to Glycine
Other atoms:
Mg (4);
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6ubv (Na: 3) - The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin
Other atoms:
Ca (4);
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6ucz (Na: 5) - Crystal Structure of Dihydropteroate Synthase From Anaplasma Phagocytophilum with Bound 6-Hydroxymethylpterin-Monophosphate
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6uf0 (Na: 2) - Crystal Structure of N-(4-((4-Methoxy-N-(2,2,2-Trifluoroethyl)Phenyl) Sulfonamido)Isoquinolin-1-Yl)-N-((4-Methoxyphenyl)Sulfonyl)Glycine Bound to Human KEAP1 Kelch Domain
Other atoms:
F (3);
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6ufc (Na: 1) - Carbonic Anhydrase 2 with Inhibitor (2Z)-2-[(4-Methoxyphenyl) Methylidene]-3-Oxo-N-(4-Sulfamoylphenyl)Butanamide (11D/D4)
Other atoms:
Zn (1);
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6ufi (Na: 1) - W96Y Oxalate Decarboxylase (Bacillus Subtilis)
Other atoms:
Mn (2);
Cl (2);
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6ug6 (Na: 2) - C3 Symmetric Peptide Design Number 1, Sporty, Crystal Form 2
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6ugb (Na: 3) - C3 Symmetric Peptide Design Number 2, Baby Basil
Other atoms:
Cl (2);
Zn (1);
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6ugc (Na: 26) - C3 Symmetric Peptide Design Number 3
Other atoms:
Cd (6);
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6ugk (Na: 2) - Crystal Structure of Circularly Permuted Human Taspase-1
Other atoms:
Cl (4);
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6uio (Na: 6) - Crystal Structure of Mouse Cres (Cystatin-Related Epididymal Spermatogenic)
Other atoms:
I (26);
Cl (8);
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6uj7 (Na: 3) - Crystal Structure of Hla-B*07:02 with R140Q Mutant IDH2 Peptide
Other atoms:
K (1);
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6ukk (Na: 1) - Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer
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6uof (Na: 1) - 1.2 Angstrom Resolution Crystal Structure of Cbs Domains of Transcriptional Regulator From Streptococcus Pneumoniae
Other atoms:
Cl (1);
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6uok (Na: 6) - Y271G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming R8-Oxo-Gtp
Other atoms:
Mg (1);
Mn (6);
Cl (1);
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6uol (Na: 3) - Y271G Dna Polymerase Beta Substrate Complex with A Templating Cytosine and Incoming Rgtp
Other atoms:
Mn (5);
Cl (1);
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6uom (Na: 4) - Y271G Dna Polymerase Beta Ternary Complex with Templating Adenine and Incoming R8-Oxo-Gtp
Other atoms:
Mn (2);
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6usa (Na: 2) - Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and GSK1-Bound Form
Other atoms:
K (10);
Cl (4);
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6utm (Na: 3) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
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6utn (Na: 2) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
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6uto (Na: 1) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
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6uw4 (Na: 1) - Cryo-Em Structure of Human TRPV3 Determined in Lipid Nanodisc
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6uxc (Na: 2) - 1.65A Resolution Structure of the Hypothetical Protein CT253 From Chlamydia Trachomatis
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6uy9 (Na: 1) - Crystal Structure of the STAC3 Tandem SH3 Domains - P269R, W284S
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6uzm (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
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6uzp (Na: 1) - Hla-B*15:01 Complexed with A Synthetic Peptide
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6uzs (Na: 1) - Hla-B*15:01 Complexed with A Synthetic Peptide
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6v04 (Na: 1) - DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus
Other atoms:
Mg (1);
Cl (3);
Page generated: Tue Feb 25 11:39:43 2025
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