Sodium in PDB 6ukk: Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer

The structure of Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer, PDB code: 6ukk was solved by N.G.Bozhanova, J.Meiler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.94 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.618, 38.993, 51.837, 90.00, 113.21, 90.00
R / Rfree (%)	18.4 / 19.9

The binding sites of Sodium atom in the Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer (pdb code 6ukk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer, PDB code: 6ukk:

Sodium binding site 1 out of 1 in the Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:30.6 occ:1.00 N A:ARG135 3.2 25.0 1.0 NH2 A:ARG135 3.3 24.5 1.0 CG A:ARG135 3.6 23.7 1.0 CB A:ASP134 3.6 29.5 1.0 CB A:ARG135 3.7 23.7 1.0 CD A:ARG135 3.7 23.3 1.0 CA A:ASP134 3.8 26.7 1.0 C A:ASP134 4.0 22.9 1.0 CA A:ARG135 4.1 25.5 1.0 CZ A:ARG135 4.3 25.8 1.0 NE A:ARG135 4.5 25.1 1.0 CG A:ASP134 4.7 38.8 1.0

N.G.Bozhanova, A.S.Gavrikov, A.S.Mishin, J.Meiler. Dib-Splits: Nature-Guided Design of A Novel Fluorescent Labeling Split System. Sci Rep V. 10 11049 2020.
ISSN: ESSN 2045-2322
PubMed: 32632329
DOI: 10.1038/S41598-020-67095-2