Sodium in PDB, part 302 (files: 12041-12080),
PDB 8zmu-9c42
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12041-12080 (PDB 8zmu-9c42).
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8zmu (Na: 1) - Glutamate Dehydrogenase (W89F-Mutant) From Thermococcus Profundus in the Unliganded State
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8znz (Na: 2) - CD73 Bound with HB0045
Other atoms:
Ca (2);
Zn (4);
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8zpb (Na: 2) - Cryo-Em Structure of Human Norepinephrine Transporter Net Bound with Norepinephrine in An Occluded State at A Resolution of 2.6 Angstrom
Other atoms:
Cl (1);
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8zqo (Na: 2) - Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated.
Other atoms:
Cl (1);
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8zqq (Na: 1) - Human High-Affinity Choline Transporter CHT1 Bound to Choline Under Nacl Condition, with Sodium and Chloride Ions Coordinated.
Other atoms:
Cl (1);
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8zst (Na: 1) - Lysozyme Crystallized with Bioassembler on Earth
Other atoms:
Gd (4);
Cl (7);
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8zsu (Na: 1) - Lysozyme Crystallized with Bioassembler in Space Microgravity
Other atoms:
Gd (4);
Cl (7);
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8ztb (Na: 1) - Crystal Structure of Active Site Influencing Variant (F218Y) of Imp-1 Metallo-Beta-Lactamase.
Other atoms:
Cl (4);
Zn (4);
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8zxi (Na: 16) - Peptide Channel Interactions in the Truncated Vhchip Nanopore
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8zyj (Na: 1) - Cryo-Em Structure of Human Testis-Specific Na+,K+-Atpase ALPHA4 in Ouabain-Bound Form
Other atoms:
F (3);
Mg (1);
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8zyv (Na: 2) - Bacterial Flagellar Sodium-Driven Stator POMA5POMB2 with 100 Mm Nacl
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8zyz (Na: 2) - Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl
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9ar6 (Na: 2) - Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam
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9avk (Na: 1) - Structure of Long Rib Domain From Limosilactobacillus Reuteri
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9azg (Na: 1) - Native Nnha in H32
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9azh (Na: 3) - Native Nnha in P1
Other atoms:
Cl (2);
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9b01 (Na: 1) - Catalytic Mutant C357A Nnha in Ches Buffer
Other atoms:
Cl (2);
-
9b02 (Na: 1) - Nnha C357A Catalytic Mutant in Tris Buffer
Other atoms:
Cl (1);
-
9b1u (Na: 2) - Crystal Structure of Pqqt with Pqq Bound
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9b1z (Na: 2) - Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Apo)
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9b74 (Na: 7) - Crystal Structure of Humanized 44H10 Fab Version 14
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9b7c (Na: 1) - High-Resolution Ambient Temperature Structure of Lysozyme Soaked with Sodium Iodide
Other atoms:
I (3);
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9b7e (Na: 4) - S_SAD Structure of Hewl Using Lossy Compression Data with A Compression Ratio of 422
Other atoms:
Cl (8);
-
9b7f (Na: 4) - S_SAD Structure of Hewl Using Lossless Default Compression
Other atoms:
Cl (8);
-
9b8u (Na: 2) - Crystal Structure of Crx-RET4 Oligonucleotide Complex
Other atoms:
As (2);
K (3);
-
9bad (Na: 2) - Crystal Structure of Bacillus Subtilis 168 L-Asparaginase II with Antileukemic Activity
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9bcz (Na: 1) - Chicken 1-Phosphatidylinositol 4,5-Bisphosphate Phosphodiesterase Zeta-1 (PLCZ1) in Complex with Calcium and Phosphorylated Threonine
Other atoms:
Cl (2);
Ca (1);
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9bfj (Na: 1) - Cryo-Em Structure of Human CHT1 in the Choline Bound State
Other atoms:
Cl (1);
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9bj5 (Na: 1) - Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group)
Other atoms:
Br (3);
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9bnh (Na: 2) - X-Ray Crystal Structure of Cu-TZ4H Tryptophan Zipper Metallo-Peptide
Other atoms:
Cu (2);
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9bps (Na: 2) - Plasmodium Falciparum Apicoplast Dna Polymerase Mutant - K417M
Other atoms:
Cl (4);
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9bs5 (Na: 2) - Bacteroides Ovatus GH97C Sus
Other atoms:
Ca (2);
-
9btx (Na: 2) - Structure of Human Mait A-F7 Tcr in Complex with Human MR1-3,4- Dihydroxybenzaldehyde
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9btz (Na: 1) - Structure of Human Mait A-F7 Tcr in Complex with Human MR1- Nicotinaldehyde
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9bw8 (Na: 1) - Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Other atoms:
F (16);
Fe (3);
-
9by5 (Na: 4) - Crystal Structure of Rt-Phyr (RUTHE_01174)
Other atoms:
Mg (3);
-
9c0e (Na: 2) - Phosphorylated Human NKCC1_K289NA492E in Complex with Furosemide
Other atoms:
K (2);
Cl (4);
Mg (2);
-
9c0h (Na: 2) - Phosphorylated Human NKCC1 in Complex with Bumetanide
Other atoms:
K (2);
Cl (2);
-
9c1d (Na: 1) - Mycobaterium Tuberculosis PKS13 Acyltransferase Incubated with Dmso
Other atoms:
Cl (6);
-
9c42 (Na: 3) - Structure of Human MR1-Ellagic Acid in Complex with Human Mait A-F7 Tcr
Other atoms:
Cl (1);
Page generated: Mon Dec 15 11:18:42 2025
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