Sodium in PDB, part 302 (files: 12041-12080),
PDB 9cld-9fe0
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12041-12080 (PDB 9cld-9fe0).
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9cld (Na: 6) - Crystal Structure of Maltose Binding Protein (Apo)
Other atoms:
Cd (4);
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9crn (Na: 1) - Crystal Structure of Streptococcus Pyogenes Tgla
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9cum (Na: 1) - Q67H Mutant of R67 Dhfr Complexed with Congo Red
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9d66 (Na: 9) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Aspartate in An Intermediate Outward Facing State
Other atoms:
Hg (3);
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9d67 (Na: 9) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound D- Aspartate in An Intermediate Outward Facing State
Other atoms:
Hg (3);
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9d68 (Na: 2) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Outward Facing State
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9d69 (Na: 3) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Intermediate Outward Facing State (Slight Upper Position)
Other atoms:
Hg (1);
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9d6a (Na: 3) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Intermediate Outward Facing State
Other atoms:
Hg (1);
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9dam (Na: 1) - A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion
Other atoms:
Cl (3);
Mg (2);
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9db5 (Na: 8) - A Darpin Fused to the 1TEL Crystallization Chaperone Via A Proline- Alanine Linker
Other atoms:
Cl (1);
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9dk1 (Na: 1) - Lexapeptide Dehydratase Complex Lxmky Apo
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9dk3 (Na: 1) - Lexapeptide Dehydratase Complex Lxmky, Hydrolysed Atp Bound
Other atoms:
Mg (2);
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9dk4 (Na: 7) - Ancestral Hydroxynitrile Lyase with Fifteen Substitutions
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9doc (Na: 5) - The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Thr- Val Linker Variant, at 1.2 Angstrom Resolution
Other atoms:
Mg (7);
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9dpm (Na: 3) - Bmp-9 Monomer Growth Factor with Cysteinylation
Other atoms:
Cl (3);
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9dw6 (Na: 2) - Crystal Structure of Sars-Cov-2 Main Protease (Mpro) C145A Mutant in Complex with Peptide From Human Trna Methyltransferase TRMT1
Other atoms:
Cl (1);
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9dys (Na: 2) - X-Ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (NYLON66) Hydrolase NYL50 at Room Temperature Bound to Tetraethylene Glycol
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9e9g (Na: 5) - Heligmosomoides Polygyrus Tgf-Beta Mimic 6 Domain 3 (TGM6-D3) Bound to Human Tgf-Beta Type II Receptor Extracellular Domain
Other atoms:
As (2);
Cl (2);
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9end (Na: 2) - Crystal Structure of Methanopyrus Kandleri Malate Dehydrogenase Mutant 3
Other atoms:
Cl (1);
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9ent (Na: 3) - Ssx Structure of Autotaxin in Cryogenic Conditions
Other atoms:
Zn (2);
Ca (1);
I (15);
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9eo4 (Na: 1) - Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine
Other atoms:
Cl (1);
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9epl (Na: 1) - Mpro From Sars-Cov-2 with 298Q Mutation
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9eqh (Na: 1) - WWP2 WW2-2,3-Linker-Hect (WWP2-Lh)
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9erv (Na: 1) - Structure of Salmonella Caprel Bound to BAS11 GP54
Other atoms:
Mg (1);
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9etn (Na: 1) - Crystal Structure of Murine CRTAC1
Other atoms:
Ca (6);
K (3);
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9eu5 (Na: 2) - Ssx Structure of Autotaxin at Room Temperature
Other atoms:
I (15);
Zn (9);
Ca (1);
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9eup (Na: 2) - Inhibitor-Free Outward-Open Structure of Drosophila Dopamine Transporter
Other atoms:
Cl (1);
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9ewp (Na: 2) - Crystal Structure of Yeast E2 Ubiquitin-Conjugating Enzyme UBC6 Ubc Domain
Other atoms:
Cl (3);
Cd (4);
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9ez6 (Na: 2) - Complex of A Mutant of the Sars-Cov-2 Main Protease Mpro with the NSP14/15 Substrate Peptide.
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9f7l (Na: 17) - Bartonella Henselae Nrnc Bound to Deoxy-Pgg
Other atoms:
Cl (2);
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9f7m (Na: 10) - Blastococcus Orn Bound to Pgg
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9f80 (Na: 1) - Crystal Structure of RV2242 Regulator C-Terminal Fragment (161-414)
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9f8x (Na: 3) - Low-Dose Structure of Marinobacter Nauticus Nitrous Oxide Reductase
Other atoms:
Ca (8);
Cl (4);
Cu (24);
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9fcf (Na: 1) - Medicago Truncatula 5'-Profar Isomerase (HISN3) D57N Mutant in Complex with Profar
Other atoms:
Cl (1);
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9fcg (Na: 2) - Medicago Truncatula 5'-Profar Isomerase (HISN3) D57N Mutant in Complex with Prfar
Other atoms:
Cl (2);
-
9fcq (Na: 1) - Cysg(N-16)-H122A Mutant in Complex with Sah From Kitasatospora Cystarginea
Other atoms:
Ca (1);
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9fdj (Na: 8) - Crystal Structure of the Nuoef Variant R66G (Nuof) From Aquifex Aeolicus Bound to Nadh Under Anoxic Conditions (Short Soak)
Other atoms:
Cl (4);
Fe (12);
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9fdk (Na: 7) - Crystal Structure of Oxidized Nuoef Variant R66G(Nuof) From Aquifex Aeolicus
Other atoms:
Cl (3);
Fe (12);
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9fdv (Na: 16) - Crystal Structure of Reduced Nuoef Variant R66G(Nuof) From Aquifex Aeolicus
Other atoms:
Fe (12);
Cl (3);
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9fe0 (Na: 9) - Crystal Structure of Reduced Nuoef Variant R66G(Nuof) From Aquifex Aeolicus Bound to Nad+
Other atoms:
Fe (12);
Cl (6);
Page generated: Tue Feb 25 11:43:41 2025
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