Sodium in PDB 9bj5: Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group)

The structure of Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group), PDB code: 9bj5 was solved by X.Zhu, S.Moineau, R.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.31 / 2.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.693, 79.168, 136.137, 90, 90, 90
R / Rfree (%)	21.9 / 26.7

The structure of Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group) also contains other interesting chemical elements:

Bromine

(Br)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group) (pdb code 9bj5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group), PDB code: 9bj5:

Sodium binding site 1 out of 1 in the Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Hepn Family Member Abiv (P212121 Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:43.9 occ:1.00 O A:VAL177 2.7 40.0 1.0 O A:ASP174 2.8 43.5 1.0 O A:ASP173 2.9 41.1 1.0 C A:ASP174 3.5 39.9 1.0 C A:VAL177 3.7 39.3 1.0 CA A:ASP174 3.8 42.4 1.0 C A:ASP173 3.9 38.8 1.0 O A:HOH412 4.1 69.2 1.0 N A:VAL177 4.3 41.0 1.0 N A:ASP174 4.3 39.8 1.0 CA A:VAL177 4.4 41.0 1.0 CB A:VAL177 4.4 39.8 1.0 N A:SER175 4.6 39.6 1.0 OD1 A:ASP173 4.6 46.0 1.0 N A:LEU176 4.7 37.8 1.0 N A:GLY178 4.8 38.8 1.0 OD1 A:ASP174 4.8 48.6 1.0 C A:SER175 5.0 40.3 1.0

X.Zhu, C.Morency, M.-E.Picard, C.Mosterd, J.A.Mcalister, A.Perrault-Jolicoeur, J.Geddes-Mcalister, R.Shi, S.Moineau. Hepn-Abiv Is An Rnase in the Abiv Antiphage System To Be Published.