Sodium in PDB 9ar6: Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam

The binding sites of Sodium atom in the Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam (pdb code 9ar6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam, PDB code: 9ar6:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:34.9 occ:1.00 OP2 B:U102 3.9 36.4 1.0 O6 B:G92 3.9 31.0 1.0 OG1 A:THR812 4.2 61.0 1.0 OP1 B:U102 4.3 35.1 1.0 O6 B:G104 4.4 42.0 1.0 N7 B:G91 4.5 31.7 1.0 O6 B:G91 4.5 37.5 1.0 CG2 A:THR812 4.6 48.4 1.0 P B:U102 4.6 33.8 1.0 N4 B:C93 4.8 27.1 1.0 N7 B:G92 4.9 26.7 1.0 C6 B:G92 5.0 31.9 1.0 CB A:THR812 5.0 54.8 1.0

Sodium binding site 2 out of 2 in the Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryoem Structure of THERMOCAS9 in Pre-Cleavage State Bound with the Dna Containing Nnnncca Pam within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:41.6 occ:1.00 O2' B:U95 2.6 45.4 1.0 O4' B:U96 2.9 55.1 1.0 O6 B:G99 3.0 45.6 1.0 O6 B:G100 3.3 37.2 1.0 N7 B:G100 3.6 28.8 1.0 C1' B:U96 3.7 43.5 1.0 N7 B:G99 3.7 35.2 1.0 C4' B:U96 3.8 46.9 1.0 C2' B:U95 3.8 38.6 1.0 C6 B:G99 3.8 33.7 1.0 C6 B:G100 3.9 34.1 1.0 C5 B:G100 4.1 24.1 1.0 C5 B:G99 4.1 32.1 1.0 C5' B:U96 4.3 41.6 1.0 O2 B:U95 4.4 40.6 1.0 N1 B:U96 4.5 40.6 1.0 C2 B:U95 4.6 36.0 1.0 C1' B:U95 4.7 37.8 1.0 C8 B:G100 4.7 28.6 1.0 N1 B:U95 4.7 33.2 1.0 N4 B:C132 4.8 29.9 1.0 C2' B:U96 4.8 41.8 1.0 O2' B:U96 4.8 42.1 1.0 C8 B:G99 4.9 34.0 1.0 O6 B:G98 4.9 41.0 1.0 C3' B:U95 4.9 38.5 1.0

M.Roth, Y.Shu, D.Trasanidou, Y.Zhao, J.Van Der Oost, H.Li. Molecular Basis For Epigenetic-Sensitive Editing By CAS9 To Be Published.